Gene detail information of Glyur002036s00032098 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G15420.1 | 8.00E-17 | Transcription factor TFIIIC, tau55-related protein |
| NR | XP_006594786.1 | 3.67E-79 | PREDICTED: general transcription factor 3C polypeptide 6-like isoform X1 [Glycine max] |
| trEMBL | tr|K7M2D2|K7M2D2_SOYBN | 4.00E-75 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G35451.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02036 | 16430 | 18732 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002036s00032098.1 | PF10419.4 | TFIIIC_sub6 | 57 | 92 | 2.80E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.654 |
| SRR1783600 | control | 3.122 |
| SRR1783602 | moderate drought stress | 3.548 |
| SRR1811619 | moderate drought stress | 3.669 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 12.516 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 12.227 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 11.909 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 11.249 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 13.096 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 13.031 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 9.084 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 9.631 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 9.282 |
| SRR2868004 | Drought Stress (root) | 11.786 |
| SRR2967015 | Control (root) | 11.252 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 5.069 |
| SRR9715740 | Leaf | 8.132 |
| SRR9715741 | Leaf | 7.644 |
| SRR9715739 | Root | 3.592 |
| SRR9715742 | Root | 2.052 |
| SRR9715743 | Root | 3.346 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 24.268 |
| SRR8749028 | MeJA induced 9h | 18.831 |
| SRR8749029 | MeJA induced 9h | 24.474 |
| SRR8749030 | Uninduced | 18.456 |
| SRR8749031 | Uninduced | 23.206 |
| SRR8749032 | Uninduced | 16.220 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 11.295 |
| SRR8400027 | Control - Root | 9.661 |