Gene detail information of Glyur002033s00038607 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G52780.1 | 4.00E-29 | Protein of unknown function (DUF3464) |
| NR | XP_004515985.1 | 1.39E-75 | PREDICTED: uncharacterized protein PAM68-like [Cicer arietinum] |
| Swissprot | tr|Q9LTD9|Y5278_ARATH | 4.00E-41 | Uncharacterized protein PAM68-like |
| trEMBL | tr|I3S0C8|I3S0C8_MEDTR | 7.00E-60 | Uncharacterized protein {ECO:0000313|EMBL:AFK33720.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02033 | 21972 | 22541 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002033s00038607.1 | PF11947.3 | DUF3464 | 84 | 185 | 6.60E-34 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.366 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.377 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.564 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.609 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.321 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.388 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 160.693 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 161.429 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.149 |
| SRR2868004 | Drought Stress (root) | 0.340 |
| SRR2967015 | Control (root) | 0.463 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 73.915 |
| SRR9715740 | Leaf | 115.218 |
| SRR9715741 | Leaf | 59.901 |
| SRR9715739 | Root | 0.087 |
| SRR9715742 | Root | 0.109 |
| SRR9715743 | Root | 0.172 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.790 |
| SRR8749028 | MeJA induced 9h | 0.718 |
| SRR8749029 | MeJA induced 9h | 0.256 |
| SRR8749030 | Uninduced | 0.128 |
| SRR8749031 | Uninduced | 0.089 |
| SRR8749032 | Uninduced | 0.318 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.000 |
| SRR8400027 | Control - Root | 0.030 |