Gene detail information of Glyur002029s00034006 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G45350.1 | 5.00E-05 | Pentatricopeptide repeat (PPR) superfamily protein |
| NR | XP_007155354.1 | 4.78E-07 | hypothetical protein PHAVU_003G194000g [Phaseolus vulgaris] |
| trEMBL | tr|K7L9A8|K7L9A8_SOYBN | 9.00E-08 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G37584.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02029 | 30198 | 31355 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.319 |
| SRR1783600 | control | 0.364 |
| SRR1783602 | moderate drought stress | 1.571 |
| SRR1811619 | moderate drought stress | 1.572 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.160 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.307 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.117 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.745 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.006 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.414 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.583 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.622 |
| SRR2868004 | Drought Stress (root) | 4.461 |
| SRR2967015 | Control (root) | 3.072 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.117 |
| SRR9715740 | Leaf | 0.754 |
| SRR9715741 | Leaf | 0.244 |
| SRR9715739 | Root | 0.136 |
| SRR9715742 | Root | 0.685 |
| SRR9715743 | Root | 0.097 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.906 |
| SRR8749028 | MeJA induced 9h | 2.462 |
| SRR8749029 | MeJA induced 9h | 2.113 |
| SRR8749030 | Uninduced | 6.135 |
| SRR8749031 | Uninduced | 5.562 |
| SRR8749032 | Uninduced | 4.156 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.036 |
| SRR8400027 | Control - Root | 2.457 |