Gene detail

Gene detail information of Glyur002029s00034004.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G28550.3	4.00E-111	related to AP2.7
NR	XP_006592243.1	0	PREDICTED: ethylene-responsive transcription factor RAP2-7-like isoform X3 [Glycine max]
Swissprot	tr\|Q9SK03\|RAP27_ARATH	4.00E-125	Ethylene-responsive transcription factor RAP2-7
trEMBL	tr\|K7LTI1\|K7LTI1_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA12G07800.3}

Sequence

Transcript Sequence

>Glyur002029s00034004.1
GTGTTGCTTCATTCTTCCCCTCCCTCTCTCTCCCCCGCCATGGAATCCAGTTGTCGGCGATACTTTCACTCTTTCTGGCGACGATGAACTCATCGCCGATAAAACGAGCTTGCGTTTCTTCCTTCTCACACCTCGTTCTGTGAGTTCCCTCCTCTTCCTACTCCCTTTTCCGGTTGCCGGGAAAATTATCCGGCGTTCTAACACAGACTGAACGACCTCGTGATTCTGTTTTATTCTTCGCTTTGCTNAGTGCTTTTCTCTCTCTATCTCTCTCTCCAACGACTTCTTCAACTGTTTTGCTTACATTACTGTTCTCATTTGATTGTTTTCGATCTGATCCATTTTCGCCGTCGGGACCATCGTCGCCGGCGATGTTGAAGCGAAGTTAGTTGAATTTGTTGTAGATAACGTTAATATAAGCTGCAGAAATTATAATTAGGAAAGAAAAACTTAAAAGAGTTGAGTTGAGTTGAACATAAAGCGCCATGTTAGATCTCAATCTCAATGCGAACTCGACCGATTCGACTCAGAACGGNGAATCGCCGGAGCTGATGGAGAAGTTTCCCGAAGGATCATGGAACCAAATGGAGGAGTCAGGAACCTCGAATTCCTCCGTCGTCAATGCGGAAGGGTCAAGCAACGGCGCAGGCGACGAGGACTCGTGCACCACGCGCGCCGACGACGTGTTGTTCACCTTCAATTTCGACATCCTTAAGGTCGAAGGCGCAAGCGGCGTCGTAACGAAGGAGCTGTTCCCGGTTAGTGGTGGAGGAGCAAAAGGAGTGGTTGAAGGCGGGCCCGGGAATTGGAAGTGGCAGGCTACGTCGTCGTTTCCACCGAGGATTAATGGCTCGGTGGATCTCTCGTTCNATCAATTAGGCGAGATGAAGATGGTTCAGCCTCAGCAACAAGCGAAGAAGAGTAGGAGGGGACCAAGGTCTCGGAGCTCGCAATACAGAGGGGTCACCTTTTACAGAAGGACCGGAAGATGGGAATCGCATATCTGGGATTGCGGGAAACAAGTGTATTTGGGTGGATTTGACACAGCTCACGCTGCTGCTAGAGCCTATGATCGAGCTGCTATTAAGTTCCGGGGAGTTGAGGCTGACATCAATTTCAATCTGAGTGATTATGAGGATGATCTTAAACAGACGAAGAATCTATCCAAGGAGGAATTCGTGCACATACTCCGTCGCCAGAGTACTGGTTTCTCAAGGGGAAGTTCAAAATATCGTGGAGTAACACTCCACAAATGTGGCCGTTGGGAAGCTCGAATGGGACAATTCCTTGGCAAAAAGTATATATATCTTGGGTTATTCGACAGCGAAGTAGAAGCTGCAAGGGCTTATGACAAGGCAGCTATCAAATGCAATGGCAGGGAAGCAGTGACTAACTTTGAGCCCAGTACATACGAAGGAGAGATGAAATCTGCAGCCATAGATGAAGGTGGACGTCAAAATCTTGACCTCAATTTGGGCATAGCGACACCAGGATCTGGTCCCAAAGAAAATCGGGGGCAACTTCACTTCACCTCCGCCCCTTACAACATGCAAGCTGGAAGAAGTTCAAGGATGGAAACCAATATCAATCCAGGAATTGGCAATCCATCTTTGAAAAGGCTGGCAGTAACTGAAGAGCGTCATTCTTTATGGAATGGCATGTGTCCCAATTTCTTTCCCAATGAGGAAAGAGCAGAGAGTATCAGCATAGAACCTTCAAAAGGACTCCCCAATTGGGCGTGGCAAACGCAAGGCCAGGTCATTGCTACCCCAGTGTCACCGTTCTCTGCTGCAGCATCATCAGGATTCTCAATTTCAGCTTCTTTTCCATCGAATGCCATCTTTCCAACAAGATCTATGAACTCAACTCCCCAGAGTCTCTGTTTTACTTCGTCCAGAGCACCTAGCAGCAACTCATCTCAATATTATTACNAGGTTAAGCCCCCGCAGGCACCACCCTAGCCTACACAGATGAAATGCGAACCATAAGAAAAGTTTGATTTCAAAATTCTTTGTATAATTCAGTGAACGATTGGTGTATGGCGAACCATGAGAAATGTCCTTGTTACCTCTTGCTTAAACCATTATGCCCTTTGTTCGGATAAATCATCTTTGAAGAAATGCTATTTTTTGAGTGCACTGGTACTACGTTGGTGCTGTTTTCCTCAAATTTGATGTTGGCAGTTTGTAATTCATGGTATTTACTCATCAATCTTGAGATTATAAACCCTGATTAAAAATTCATGGTATTTGCCCACCAGTCTTGAGAGTTAGAGATTATAGGCCCTGATTGTGCATCCCAGAAATGGGAGGAANGAAAAGAGTATTTTCAAGGCCGTTTACTCATTTCTTGTTTTTTAAATTCT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02029	23231	27763	-

Gene family

Gene family	subfamily
Transcription Factors Family	AP2
EAR motif-containing Proteins	AP2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function

GO:0003677 DNA binding

GO:0003700 transcription factor activity, sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002029s00034004.1	PF00847.15	AP2	155	204	2.00E-14
Glyur002029s00034004.1	PF00847.15	AP2	247	297	1.30E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	38.915
SRR1783600	control	38.966
SRR1783602	moderate drought stress	76.650
SRR1811619	moderate drought stress	76.215

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	42.114
DRR006520	Root Summer glycyrrhizin high producing strain	42.467
DRR006521	Root Winter glycyrrhizin high producing strain	28.321
DRR006522	Root Winter glycyrrhizin high producing strain	27.232
DRR006523	Root Summer glycyrrhizin low producing strain	25.733
DRR006524	Root Summer glycyrrhizin low producing strain	26.507
DRR006525	Leaf Summer glycyrrhizin high producing strain	35.421
DRR006526	Leaf Summer glycyrrhizin high producing strain	35.317

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	16.792
SRR2868004	Drought Stress (root)	20.852
SRR2967015	Control (root)	66.106

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	72.924
SRR9715740	Leaf	74.135
SRR9715741	Leaf	88.589
SRR9715739	Root	8.738
SRR9715742	Root	32.409
SRR9715743	Root	27.446

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	9.967
SRR8749028	MeJA induced 9h	13.053
SRR8749029	MeJA induced 9h	11.712
SRR8749030	Uninduced	17.527
SRR8749031	Uninduced	8.432
SRR8749032	Uninduced	9.100

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	43.202
SRR8400027	Control - Root	48.782