Gene detail

Gene detail information of Glyur002026s00038726

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G10080.1	3.00E-140	Eukaryotic aspartyl protease family protein
NR	XP_006593577.1	0	PREDICTED: aspartic proteinase-like protein 1-like isoform X2 [Glycine max]
Swissprot	tr\|Q9LX20\|ASPL1_ARATH	3.00E-176	Aspartic proteinase-like protein 1 (Precursor)
trEMBL	tr\|I1LW14\|I1LW14_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA13G02190.1}

Sequence

Transcript Sequence

>Glyur002026s00038726.1
ATGGCGGTTAGACTCCTTATTTTGCTGTTACTGGCGAAAGGTCTTATCTTGGAGGGTGCAGTTGAGCTCACATTCTCTTCCAGGCTCATTCACCGCTTCTCTGATGAGGCCAAGGTTCATTTGGGTTCAAGGAGTAGCAATGGTGGTGCTGCAGAGCTTCAATCTTGGCCAAAGAGGAGAAGCTCTGAGTATTTCAGGTTGCTTCTGAGAAGTGACCTTACTCGGCAGAGGGTGAAGCTTGGATCGCAGTATGAGTCTCTGTATCCTTCTGAGGGAAGCCAAACCTTCTTCTTTGGCAATGCGTTTGATTGGTTACATTACACATGGATTGATATAGGGACTCCAAATGTTTCATTTCTTGTTGCATTGGATACCGGAAGTAATCTGCTTTGGGTACCTTGTGACTGCATAGAATGTGCTCCCTTGTCAGCTGATGCTCCCTTCTATGTGGGGGCATCTCTGATGCAGGATAGGGATCTGAATCAGNATAGCCCATCATTGTCCAGCACCAGCAGACATCTACCTTGCAGTCATCAGTTGTGTAATCCAAAATCCAGTTGCAAAGGTTCTAAGGATCCTTGTCCTTATATTACTCGGTACGCCTCATATAATACCTCAAGTTCTGGATTTCTTATTGAAGACAAACTACATTTGGCATCCAATAGCAGACATGGAACAAAGAATTCCATGCAAGCCTCTATAATTTTAGGTTGCGGTAGGAAACAAAGTGGTGGCTATTTAGATGGAGCTGCTCCCGATGGTGTTTTGGGGCTAGGACCTGGAAGCATTTCAGTACCAAGTTTGCTGGCAAAGGCAGGACTTATTCGGAATTCTTTCTCAATTTGTTTAAATGAGGATGATTCTGGGAGAATTCTCTTTGGCGATCAAGGGCATGTCACCCAACAATCTACTCCGTTCTTGCCTGTAAATGGGGACTTTATTGCCTATGTTGTTGGAGTAGAGAGGTTCTGTGTTGGGAGTTTCTGTCTCAAGGAAACTGGATTTCGAGCACTTATTGACAGTGGATCNTCTTTCACATATCTTCCTGATGGCGTTTTTAAGAAAGTTGTAGCAGAGTTTGACAACCAAGTAAATGCAACCAGGATCACCCTCCAAAAATACCCATGGGAGTACTGCTATAATGCCAGTTCACAGGAGTTGATTAACATTCCCCCAATGAAACTCGCTTTCTCTGAGAATCAAACTTTTGTAATTCAAAACCCATTGTTTGCTTATCCTATCAGTCAGGAATATACTGCCATTTGTTTGACTGTAAATCAGGCTCAAGATGACTATGGTGCCATTGGACAAAACTTCCTGATGGGTTATCGCATGGTCTTTGATCGGGAGAATCTACGGTTTGGCTGGTCTAGATCCAATTGTCAAGATAGCAAGGGAGACACAGCAAATTTCACATCACCGTCCAATGGTGGGTCACCAAACTCTTCTTTACCAGCCAATCAGCACCAGAGAGTCCCTANCACTCGTGCTGTACCACCTGCTGTTGCTGGACAGGCTTCCCCCAGACCCTCCACAGTCGCACCATTACTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02026	36805	49142	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006508 proteolysis

molecular_function
GO:0004190 aspartic-type endopeptidase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002026s00038726.1	PF14543.1	TAXi_N	109	295	8.40E-30
Glyur002026s00038726.1	PF14541.1	TAXi_C	331	457	1.90E-16

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.173
SRR1783600	control	4.283
SRR1783602	moderate drought stress	4.579
SRR1811619	moderate drought stress	4.545

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.362
DRR006520	Root Summer glycyrrhizin high producing strain	2.270
DRR006521	Root Winter glycyrrhizin high producing strain	1.105
DRR006522	Root Winter glycyrrhizin high producing strain	1.208
DRR006523	Root Summer glycyrrhizin low producing strain	2.725
DRR006524	Root Summer glycyrrhizin low producing strain	2.970
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.059
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.057

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.972
SRR2868004	Drought Stress (root)	1.290
SRR2967015	Control (root)	1.146

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.654
SRR9715740	Leaf	0.082
SRR9715741	Leaf	0.433
SRR9715739	Root	2.356
SRR9715742	Root	3.193
SRR9715743	Root	3.814

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.030
SRR8749028	MeJA induced 9h	0.251
SRR8749029	MeJA induced 9h	0.627
SRR8749030	Uninduced	0.164
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.889
SRR8400027	Control - Root	6.338