Gene detail information of Glyur002023s00037748 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G16610.1 | 0 | pentatricopeptide (PPR) repeat-containing protein |
| NR | XP_006585975.1 | 0 | PREDICTED: pentatricopeptide repeat-containing protein At3g16610-like isoform X1 [Glycine max] |
| Swissprot | tr|Q9LUS3|PP237_ARATH | 0 | Pentatricopeptide repeat-containing protein At3g16610 |
| trEMBL | tr|K7L9M5|K7L9M5_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G40245.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02023 | 20659 | 26582 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002023s00037748.1 | PF01535.15 | PPR | 218 | 243 | 0.0059 |
| Glyur002023s00037748.1 | PF01535.15 | PPR | 246 | 276 | 0.099 |
| Glyur002023s00037748.1 | PF01535.15 | PPR | 348 | 374 | 0.21 |
| Glyur002023s00037748.1 | PF13041.1 | PPR_2 | 446 | 493 | 3.60E-09 |
| Glyur002023s00037748.1 | PF13041.1 | PPR_2 | 548 | 596 | 7.80E-08 |
| Glyur002023s00037748.1 | PF01535.15 | PPR | 624 | 647 | 0.028 |
| Glyur002023s00037748.1 | PF14432.1 | DYW_deaminase | 723 | 846 | 4.80E-16 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.135 |
| SRR1783600 | control | 3.113 |
| SRR1783602 | moderate drought stress | 5.134 |
| SRR1811619 | moderate drought stress | 5.564 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.503 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.533 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.125 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.100 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.563 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.654 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.359 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.332 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.794 |
| SRR2868004 | Drought Stress (root) | 1.240 |
| SRR2967015 | Control (root) | 1.186 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.444 |
| SRR9715740 | Leaf | 1.550 |
| SRR9715741 | Leaf | 1.311 |
| SRR9715739 | Root | 0.547 |
| SRR9715742 | Root | 2.312 |
| SRR9715743 | Root | 1.695 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.980 |
| SRR8749028 | MeJA induced 9h | 2.723 |
| SRR8749029 | MeJA induced 9h | 1.493 |
| SRR8749030 | Uninduced | 0.842 |
| SRR8749031 | Uninduced | 2.224 |
| SRR8749032 | Uninduced | 0.906 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.739 |
| SRR8400027 | Control - Root | 4.385 |