Gene detail

Gene detail information of Glyur002022s00030449

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G26530.2	6.00E-166	Aldolase superfamily protein
NR	NP_001237315.1	0	fructose-bisphosphate aldolase [Glycine max]
COG	YP_002602040.1	4.00E-118	hypothetical protein HRM2_07620 [Desulfobacterium autotrophicum HRM2]
Swissprot	tr\|P46256\|ALF1_PEA	0	Fructose-bisphosphate aldolase, cytoplasmic isozyme 1
trEMBL	tr\|Q6RUF6\|Q6RUF6_SOYBN	0	Fructose-bisphosphate aldolase {ECO:0000256\|RuleBase:RU003994}

Sequence

Transcript Sequence

>Glyur002022s00030449.1
GTTGGGTTTGGAACCTCTCCTCTCGGTATATTCCTTTGAGAGGTTTTTTTATCTATATAGCTTTGGTCTTGGCTAAACTCAGTTTTCGTGCTGTCGTCTGTTATCTGTTTCCCGCCATCCAATAACCAATTTCAAAGGCTTGAAACCATGTCTGCCTTTGTTGGAAAGTATGCAGATGAGCTTATCAAGAATGCCAAGTACATAGCCACACCTGGTAAGGGCATCTTGGCAGCAGATGAGAGCACTGGCACCATTGGGAAGCGCCTAGCCAGCATCAACGTTGAGAACATCGAGGCGAACCGCCAAGCCCTTCGTGAACTCCTCTTCACCTCTCCCAATGCCCTGCAGTACCTCTCTGGTGTCATCCTCTTTGAGGAAACTCTTTACCAGAAGGCCTCTGATGGGAAGCCTTTCGTTGANGTCCTCCAAGAGAACAATGTCATCCCAGGCATCAAAGTTGACAAGGGTGTTGTTGAATTGGCTGGCACTAACGGCGAAACCACAACCCAAGGCTTTGACTCCCTGGGAGCTAGGTGCCAGCAGTACTACAAGGCCGGGGCACGATTCGCCAAGTGGCGTGCCGTCCTCAAGATTGGTCCCANTGAGCCCTCTGAGTTGTCCATCCAGCAGAATGCACAGGGGTTGGCACGCTATGCCATCATTTGCCAGGAGAATGGGCTTGTGCCTATTGTTGAGCCTGAGATTTTAACTGATGGGCCTCATGACATCGCCAAATGNGCTGCTGTCACTGAAACTGTGCTTGCAGCTGTTTACAAGGCACTGAATGATCACCATGTCCTTCTTGAAGGAACTCTTCTCAAGCCCAACATGGTACCACCTGAGGTGATTGCTGAGCACACAGTTACTGCACTCCGCAGAACTGTCCCAGCTGCGGTACCAGGGATTGTGTTTCTGTCAGGTGGACAGAGTGAAGAAGAAGCCACACTCAACCTGAATGCAATGAACAAGCTGGGGGTGCTGAAGCCATGGACTCTGTCATTCTCATTTGGACGAGCACTGCAGCAAAGCACACTCAAGACATGGGGTGGGAAGAAAGAGAATGTTGCCAAGGCACAAGTGGCATTTCTGGCAAGGTGCAAGGCCAATTCAGATGCTACTCTGGGCAAGTATGTTNGTGGAAGCGGAACTGGGTTGGCTTCTGAGAGTTTGCATGTCAAGGACTACAAGTATTAAAGGCTTCTAAATGGAGCTTGGGATGGTGGTTTGATTTGGGGTGGGTGCATTTTAGCNTATGTATGATGATGCTCTTCTTAAGCTTTTTCTCTTCTGATTAACATGCTTCATTTTGGGTATATATATTCTTATAAATGTCAGTTTATACCTTTATATTATAGGAGCTAATTTTGATGTCAAGATGATGATGGTGTACCACTCAAAAATAAAATGCCACTTTTGATTTGTTAAACGGATAAATTTTTTTCCCCACAAAGATGTTTGAGGGAGCCATGAAGACCCACATTTTCATGTCAAAGTGATACGAAGTTGTGCATGATATCAATAGTTGAAACAATTAAATGTTGAATTTTTTTTTTTGTTAAATAACTTTTAGTTTTTGATTTCTTATCAATGATGGCTTAGCTTCAGAGAATTGGTAAAATTAATTTTCTAATAACAAGTGGACGTTAAGCAGAAGTAATGTACTAATGTTTTGGTGGGTCCATACTCACTNACAAGAGGAGGATATTCTCCTAATACTACAATAGATTCACATGCTGTATCGGCCCCCCACGCAAACTATATGTGATTAAACAAATGTGTGTGTCTGCTTTGAAGATTCTGGATTAAAGACACGATTTTGGGTTGTTAGGCTCGCCACAACAAATTATGGATGAACACTATTGAAACCTTAGTTGATACCACGTCAATGATCAATTTTTGTCGACCCCTTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02022	8507	11194	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01623	ALDO	EC:4.1.2.13	Carbon metabolism	map01200
			Biosynthesis of amino acids	map01230
			Glycolysis / Gluconeogenesis	map00010
			Pentose phosphate pathway	map00030
			Fructose and mannose metabolism	map00051
			Carbon fixation in photosynthetic organisms	map00710
			Methane metabolism	map00680

Gene Ontology

biological_process
GO:0006096 glycolytic process

molecular_function

GO:0003824 catalytic activity

GO:0004332 fructose-bisphosphate aldolase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002022s00030449.1	PF00274.14	Glycolytic	11	348	3.50E-164

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.209
SRR1783600	control	0.187
SRR1783602	moderate drought stress	0.215
SRR1811619	moderate drought stress	0.218

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.253
DRR006520	Root Summer glycyrrhizin high producing strain	0.218
DRR006521	Root Winter glycyrrhizin high producing strain	0.721
DRR006522	Root Winter glycyrrhizin high producing strain	0.659
DRR006523	Root Summer glycyrrhizin low producing strain	0.404
DRR006524	Root Summer glycyrrhizin low producing strain	0.346
DRR006525	Leaf Summer glycyrrhizin high producing strain	890.916
DRR006526	Leaf Summer glycyrrhizin high producing strain	886.786

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.227
SRR2868004	Drought Stress (root)	0.240
SRR2967015	Control (root)	0.097

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	221.607
SRR9715740	Leaf	537.987
SRR9715741	Leaf	139.348
SRR9715739	Root	0.026
SRR9715742	Root	0.337
SRR9715743	Root	0.148

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.104
SRR8749028	MeJA induced 9h	0.112
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.033
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.325
SRR8400027	Control - Root	0.465