Gene detail information of Glyur002021s00042803 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| NR | ABN08573.1 | 2.75E-12 | Ribonuclease H [Medicago truncatula] |
| trEMBL | tr|A2Q4M4|A2Q4M4_MEDTR | 1.00E-12 | Ribonuclease H {ECO:0000313|EMBL:ABN08573.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02021 | 32045 | 32376 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002021s00042803.1 | PF13456.1 | RVT_3 | 29 | 100 | 3.70E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.455 |
| SRR1783600 | control | 6.422 |
| SRR1783602 | moderate drought stress | 14.653 |
| SRR1811619 | moderate drought stress | 15.443 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.244 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.673 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 7.758 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.718 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.562 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.931 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.743 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.047 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 2.353 |
| SRR2868004 | Drought Stress (root) | 1.283 |
| SRR2967015 | Control (root) | 3.458 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.010 |
| SRR9715740 | Leaf | 0.109 |
| SRR9715741 | Leaf | 0.018 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 17.293 |
| SRR8749028 | MeJA induced 9h | 16.451 |
| SRR8749029 | MeJA induced 9h | 8.775 |
| SRR8749030 | Uninduced | 4.125 |
| SRR8749031 | Uninduced | 2.665 |
| SRR8749032 | Uninduced | 3.259 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 7.515 |
| SRR8400027 | Control - Root | 12.073 |