Gene detail information of Glyur002015s00035160 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G23420.3 | 4.00E-74 | NAD(P)-binding Rossmann-fold superfamily protein |
| NR | XP_004512815.1 | 5.44E-121 | PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic-like [Cicer arietinum] |
| COG | YP_003392872.1 | 2.00E-41 | short-chain dehydrogenase/reductase SDR [Conexibacter woesei DSM 14684] |
| Swissprot | tr|Q6RVV4|TIC32_PEA | 4.00E-106 | Short-chain dehydrogenase TIC 32, chloroplastic |
| trEMBL | tr|A0A072UBG6|A0A072UBG6_MEDTR | 9.00E-117 | NAD(P)-binding rossmann-fold protein {ECO:0000313|EMBL:KEH26388.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02015 | 47168 | 51069 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002015s00035160.1 | PF00106.20 | adh_short | 25 | 161 | 3.20E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.230 |
| SRR1783600 | control | 0.375 |
| SRR1783602 | moderate drought stress | 0.023 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.355 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.110 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.481 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.937 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.589 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.859 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.342 |
| SRR2868004 | Drought Stress (root) | 4.099 |
| SRR2967015 | Control (root) | 2.533 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.837 |
| SRR9715740 | Leaf | 16.649 |
| SRR9715741 | Leaf | 5.214 |
| SRR9715739 | Root | 0.081 |
| SRR9715742 | Root | 0.036 |
| SRR9715743 | Root | 0.050 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.628 |
| SRR8400027 | Control - Root | 1.280 |