Gene detail information of Glyur002013s00039482 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G23230.1 | 1.00E-73 | nicotinamidase 2 |
| NR | XP_003589724.1 | 7.78E-126 | Isochorismatase [Medicago truncatula] |
| COG | YP_003893733.1 | 2.00E-36 | isochorismatase hydrolase [Methanoplanus petrolearius DSM 11571] |
| Swissprot | tr|Q9FMX7|NIC2_ARATH | 5.00E-96 | Nicotinamidase 2 {ECO:0000305} |
| trEMBL | tr|G7IBE1|G7IBE1_MEDTR | 3.00E-126 | Isochorismatase hydrolase family protein {ECO:0000313|EMBL:AES59975.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02013 | 8382 | 9792 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002013s00039482.1 | PF00857.15 | Isochorismatase | 26 | 189 | 3.50E-42 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 27.098 |
| SRR1783600 | control | 25.624 |
| SRR1783602 | moderate drought stress | 39.339 |
| SRR1811619 | moderate drought stress | 37.341 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 49.300 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 50.143 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 38.770 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 42.922 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 27.654 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 25.919 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.915 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.265 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 18.902 |
| SRR2868004 | Drought Stress (root) | 16.956 |
| SRR2967015 | Control (root) | 14.907 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.616 |
| SRR9715740 | Leaf | 3.467 |
| SRR9715741 | Leaf | 3.754 |
| SRR9715739 | Root | 15.258 |
| SRR9715742 | Root | 21.171 |
| SRR9715743 | Root | 17.715 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 11.044 |
| SRR8749028 | MeJA induced 9h | 11.275 |
| SRR8749029 | MeJA induced 9h | 12.658 |
| SRR8749030 | Uninduced | 10.287 |
| SRR8749031 | Uninduced | 7.557 |
| SRR8749032 | Uninduced | 10.797 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 24.581 |
| SRR8400027 | Control - Root | 33.038 |