Gene detail information of Glyur002013s00039481 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G23230.1 | 9.00E-73 | nicotinamidase 2 |
| NR | XP_003589724.1 | 2.94E-124 | Isochorismatase [Medicago truncatula] |
| COG | YP_003893733.1 | 2.00E-36 | isochorismatase hydrolase [Methanoplanus petrolearius DSM 11571] |
| Swissprot | tr|Q9FMX7|NIC2_ARATH | 7.00E-95 | Nicotinamidase 2 {ECO:0000305} |
| trEMBL | tr|G7IBE1|G7IBE1_MEDTR | 1.00E-124 | Isochorismatase hydrolase family protein {ECO:0000313|EMBL:AES59975.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02013 | 1309 | 2686 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002013s00039481.1 | PF00857.15 | Isochorismatase | 26 | 189 | 3.50E-42 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 27.628 |
| SRR1783600 | control | 26.610 |
| SRR1783602 | moderate drought stress | 39.528 |
| SRR1811619 | moderate drought stress | 37.286 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 46.399 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 47.771 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 36.265 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 39.974 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 24.038 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 22.754 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.985 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.307 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 17.537 |
| SRR2868004 | Drought Stress (root) | 15.350 |
| SRR2967015 | Control (root) | 13.608 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.373 |
| SRR9715740 | Leaf | 2.581 |
| SRR9715741 | Leaf | 3.222 |
| SRR9715739 | Root | 12.933 |
| SRR9715742 | Root | 18.727 |
| SRR9715743 | Root | 18.859 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 7.357 |
| SRR8749028 | MeJA induced 9h | 7.623 |
| SRR8749029 | MeJA induced 9h | 7.899 |
| SRR8749030 | Uninduced | 4.194 |
| SRR8749031 | Uninduced | 2.966 |
| SRR8749032 | Uninduced | 7.256 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 19.798 |
| SRR8400027 | Control - Root | 27.601 |