Gene detail

Gene detail information of Glyur002012s00036493

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G25180.1	5.00E-105	response regulator 12
NR	KHN15214.1	0	Two-component response regulator ARR12 [Glycine soja]
COG	YP_002248567.1	3.00E-17	FrgC protein [Thermodesulfovibrio yellowstonii DSM 11347]
Swissprot	tr\|P62598\|ARR12_ARATH	3.00E-124	Two-component response regulator ARR12
trEMBL	tr\|I1L2E2\|I1L2E2_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA09G14650.1}

Sequence

Transcript Sequence

>Glyur002012s00036493.1
ATTGTATTGTTATTTTGCATCAGCGATTAACAAATAATTAAAGTCAAAGGCTTTTTTCACTGTTCCTTTGGGAGAAAAAAAAGTGAAGGACAAATAACAGAGCAGAGCAGAACAACAACAACAGAGAGAGGGAAGAGAGAGAGAGAGAGAGAGCTTTCACTAAAATACTAAAAGATTTCTGTTTTGTTTTGTTGGCTTCAAATTCATCACTGTCCATCTTGTACGGGTTTCGTTACCCTTTCTCCAGTTCTCACATTTCTCTTTTTCTTTCTCTCTCTCTCTCTGTCTCTCTCGTCTTGCATACCCTTTTGTTGTTGGTGAAGGAGAGACCTTGAGGGCAAGTTCCCAGTTGTCAAAATTGGAGCTTTTTGCTCTGTGAGGCTTGATCACTGTACAAGCGCTTGGTTTTCTCATCTGGGTATTTCTGGTTCTGCTCTCTGCAGCTGGCTTGAGATGGCTGTGGAGAACCAAAGGGGTCATTTGGTGGATGAAGATGGGTCCATTGACCGTTTCCCTGTGGGTATGCGTGTTCTTGCTGTAGATGATGACCCAACTTGTCTCAAATTGTTGGAGAACCTGCTTCGCAAATGCCAGTATCAGGTTACTACAAGTAATGGGGCAATTGAGGCGCTGAGAATGTTGAGGGAAAACAGGAACAAGTTTGACCTCGTTATTAGTGATGTGAATATGCCTGACATGGATGGATTTAAACTCCTTGAGTTGGTGGGACTTGAAATGGATTTACCCGTCATCATGTTGTCAGGATACAGTGATACAAAGCTGGTGATGAAGGGTGTTACACATGGTGCGTGTGACTATTTGCTGAAACCCGTTCGAATTGAAGAGCTCAAGAACATATGGCAGCATGTAGTCCGAAGAAAGAATTTTGATGGCAAGGATCAGAATAAGGCTTCCAATGATGAAAGGGCTCCTCATATGTCTGGGGGAGGCAGTCAAAACATATCGGAGAACAGTGCTGACCAGAATAGAAAGCTAGGTAAAAAGAGGAAGGAGCAAGGTGAGGAGGAAGAAGATGATGAAGGGAATGGAGATGATGACGACCCCTCAACACAGAAGAAACCTCGTGTAGTTTGGTCTGTTGAGCTGCATAGAAAATTTGTTGCTGCGGTTAATCAACTGGGCCTGGATAAGGCTGTTCCTAAGAAAATACTTGACCTGATGAATGTTGAAGGGCTTACAAGAGAAAATGTGGCAAGCCATTTGCAGAAATATAGACTCTATCTGAAAAAGGCAACCCAACAAGCTAGCATGGTTGCTGCATTGGGAAGTGGTGATTCTTACCTTCGGATGGGTGCAATAGATGGATATGCAGATTTTTGCTCCTCCTCTGGATCCGGAAGGATCTCAAGCACCACACTGCCATCATATGCATCAAGTGGAATCTTCGGTAGGCTGAATTCCCCAGCTGGCTTGAGCATAAGAGGAATTAGTTCTCCTACACTAATCCGGCCCGTTCAGTCTCAAAATATTAACGGCTCCTTGAATACACTTGGAAACATCCAGCCGTCCATGTTTCCCGTAAATCAAAGCTCGAGCTTATTACAGGGCATCCCAACATCGATTGAGCTTAACCAATCTAAGCAAAACAACTGCACAACTGGTATATCACAGTTAACTCCAGTTGATTCAAGTGGATTTCCAGTTGCCTCTGGCTTCCCTGACACTAGGGCTACTGTTAGTAATGCAAACAGTTCTGTACCGTGTGTCTCGAGCAACCATTTAATGTTACAAGGAAATTCACAACAAACACACAATACAGGAGGAGCATTGAGAAATCAGTCTTCTGTTAGAGCTGCGTCTTTGGGAACAGAATCTTTTGACATCAGCATTTGTGGTCCTTCTAATTTGTTGGATTATAATCGGTGTAATGAAAACTGGCAGAGTGCAGCTCAGTTATCTAAATTTCCTGCCAACTCTTTGCCACTATGTGAGGGTTTCAATAACGACCAACTGCCTCCCACTCGCATAAATGTTACTAACTCAAGTACTCATATTGGTAACAGTCCGGTGGATTTTTCTTCCGGAGTTGCAATTGGTGCATCTTTGGAGGATGCCAGGAATGAGCTGAGATGCCAAGAAGGCTTGATTGGTAATATTGTACAGCCTTCAAGTTACACGCCGCGACAAAGGTGGGAAGAACATAAACTGGATTACAACCAAAACATGAGTCGTCCCTTCAATCTGGTAAACTCACATGTTTCTTCCAGCGGAGTGACAAATTCTTTGGGGCACAGTTTAAATCAAAATCAAGCAATGTGCAGCAATAGAGTTGACACATCTTTTGTTGGCCAACTAAATGGTGCTTCCCCATCAATCGCCCGGTGCAGTGAAGTTGAGAAATTCTCTTCAGACATGCGACTGAAATCGAGTGATGCCTACATGTTGGAGCAAATGAAGTCCCAAGATGGGTTTATTCAGAATTTTGGGACCTTAGATGACATAATGGGTGCAATGGTCAAAAGGGAGCAGAATGAGATGAAATTGATGGATGGAGAAATGGGATTTGATGCTTACCCTGTTGGATCATGTATTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02012	392	5460	+

Gene family

Gene family	subfamily
Transcription Factors Family	ARR-B

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0000160 phosphorelay signal transduction system

molecular_function

GO:0003677 DNA binding

GO:0003682 chromatin binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002012s00036493.1	PF00072.19	Response_reg	26	134	1.10E-21
Glyur002012s00036493.1	PF00249.26	Myb_DNA-binding	211	261	1.30E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	10.703
SRR1783600	control	10.701
SRR1783602	moderate drought stress	17.417
SRR1811619	moderate drought stress	17.323

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	13.934
DRR006520	Root Summer glycyrrhizin high producing strain	13.897
DRR006521	Root Winter glycyrrhizin high producing strain	11.152
DRR006522	Root Winter glycyrrhizin high producing strain	10.839
DRR006523	Root Summer glycyrrhizin low producing strain	14.227
DRR006524	Root Summer glycyrrhizin low producing strain	14.242
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.803
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.825

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	29.047
SRR2868004	Drought Stress (root)	30.804
SRR2967015	Control (root)	33.091

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	9.374
SRR9715740	Leaf	8.490
SRR9715741	Leaf	9.297
SRR9715739	Root	14.275
SRR9715742	Root	17.536
SRR9715743	Root	16.296

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	20.300
SRR8749028	MeJA induced 9h	35.997
SRR8749029	MeJA induced 9h	18.704
SRR8749030	Uninduced	17.045
SRR8749031	Uninduced	7.329
SRR8749032	Uninduced	6.762

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	23.511
SRR8400027	Control - Root	24.609