Gene detail

Gene detail information of Glyur002007s00039767

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G20820.1	7.00E-136	FAD-binding Berberine family protein
NR	XP_004504926.1	0	PREDICTED: cannabidiolic acid synthase-like 2-like [Cicer arietinum]
COG	YP_001698653.1	2.00E-27	reticuline oxidase [Lysinibacillus sphaericus C3-41]
Swissprot	tr\|A6P6V9\|CBDAS_CANSA	6.00E-162	Cannabidiolic acid synthase (Precursor)
trEMBL	tr\|I1K2W8\|I1K2W8_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA05G25460.1}

Sequence

Transcript Sequence

>Glyur002007s00039767.1
ATGATGCCTCTAAGCTCATATTTTGCTGTTGTTGCAATTGCTTTCTTGTTTGCTGTTGCATCTTCTACGGCTGATAATCATGAAAGCTTCTTTCAATGTCTTCAAAGTTATTCTCATAACTCCACTTCAATCTCTAAGGTTGTTTACACCCAAACCAACTCCTCTTACTCGTCGATACTGCGGTTTTCCACTCATAACCGCAGATTCACATCCAACGCAACTCCAAAACCCCTTGTTATTGTGACACCTCTTCAAGTATCCGAAATTCAAGCCACCATAATCTGTTCCCAACGCCATGGCATGCATATTCGAACTCGAAGTGGTGGGCATGACTATGAGGGTCTGTCCTATGTTTCCCATGTTGATCCATTTGTGGTCATTGATCTCATAAACCTTCGAGAAATCCAAGTAGACGTAGAAAATAGCACTGCATGGGTTGAAGCAGGGGCAACTATTGGTGAACTTTACTATAGCATAAGCCAGAAAAGCAGAACCCTTGGCTTCCCTGCAGGATTTTGCCCACCCGGCGGTGGCTATGGATCCTTGTTGCGCAAATACGGTCTTGCCGCAGATCATGTAATTGATGCCCGCATAATTGATGTGAAGGGTAGGCTTCTTGACAGTGAAGCAATGGGTGAGGATCTATTTTGGGCCATTAGAGGAGTCATCACAGCGTGGAAGATAAAATTGGTTCCTGTTCCACCAACTGTGACAGTGTTCAGGGTTTCCAAGACATTGGAACAAAATGCAACCAAGCTTATTCACAAGTGGCAGCATGTGGCAAATAAACTTGATGAGGACCTATTCATTAGGATCAGCTTGGCGAGGGTAAATTCAAGTCAAACAAGGGAAGCTAACAGCGTGGATAGGCTCCTTCCTTTGATGCAAGAGGTGTTCCCAGAGCTGGGATTGATTAGAGAAGACTGTACTGAGATGAGTTGGGTAGAGTCAGTCCTCTACCTTTATGAATTTACAAGTGGTCAACCTCCTCTTGAGGTTTTGCTCAACAGAACTACCGATTTCATGTTTATGAAAGGGAAATCTGATTATGTAAGAGATCCTATTCCGGACTCTGGGTTAGAAGGGTTATGGCCAATGTTTTATGAAGATGAGGCCCAAGATGCAGTGATGACGCTCCAACCTTATGGAGGCAAAATGGATGAGATACCGGAGTCTGAAATTCCATTCCCGCACAGAGCTGGAAACATTTACGCTGCTATGTACTGGGTTATTTGGCGAGAGGAAGGGGATGAGGTTGCACAAAGGCACATTAACTGGATTAGAAGACTGTACAGTTATATGGAACCTTTTGTTTCAAAGTCTCCTAGAGCTGCATATGTCAATGAAAGAGACCTTGACATTGGGGTGAATAATATTAATGGCTACACAAGCTATGAGCAAGCCAGCATTTGGGGTCTCAAGTATTTCAAGAACAACTTCAATAGATTGGCTAAAGTGAAGACCATGGTTGATCCTCTAAACTTCTTCAGAAATGAACAGAGCATACCTTCTCTTATGTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02007	32765	34362	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0003824 catalytic activity

GO:0008762 UDP-N-acetylmuramate dehydrogenase activity

GO:0016491 oxidoreductase activity

GO:0016614 oxidoreductase activity, acting on CH-OH group of donors

GO:0050660 flavin adenine dinucleotide binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002007s00039767.1	PF01565.18	FAD_binding_4	77	207	1.70E-20
Glyur002007s00039767.1	PF08031.7	BBE	445	503	5.40E-21

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	24.811
SRR1783600	control	25.010
SRR1783602	moderate drought stress	10.248
SRR1811619	moderate drought stress	10.095

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.091
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.061

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	36.724
SRR2868004	Drought Stress (root)	73.674
SRR2967015	Control (root)	29.892

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.488
SRR9715740	Leaf	0.326
SRR9715741	Leaf	0.270
SRR9715739	Root	68.839
SRR9715742	Root	33.603
SRR9715743	Root	37.028

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.087
SRR8749028	MeJA induced 9h	21.733
SRR8749029	MeJA induced 9h	6.758
SRR8749030	Uninduced	0.868
SRR8749031	Uninduced	3.957
SRR8749032	Uninduced	1.656

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	146.960
SRR8400027	Control - Root	101.046