Gene detail

Gene detail information of Glyur002006s00031341.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G05790.1	8.00E-142	O-Glycosyl hydrolases family 17 protein
NR	XP_004502047.1	0	PREDICTED: glucan endo-1,3-beta-glucosidase 11-like [Cicer arietinum]
Swissprot	tr\|Q8L868\|E1311_ARATH	8.00E-101	Glucan endo-1,3-beta-glucosidase 11 (Precursor)
trEMBL	tr\|G7J7A1\|G7J7A1_MEDTR	0	Glycoside hydrolase family 17 protein {ECO:0000313\|EMBL:AES71661.2}

Sequence

Transcript Sequence

>Glyur002006s00031341.1
CACACTCCCTCACATTTTCCTACACANTTACAGCATGCATTCCCTCATTTTCTCCACCATCTTTTTCTACCTCACACTTCTCACACTTGCAGATGGTGGTTCCATTGGAGTGAACTATGGNCGCATAGCCAACAACCTTCCCTCAGCGGTTAAAGTCGTTAGGCTTCTGAAATCCCAGGGCATAGACCGGGTCAAGCTATACGACACCGACCGGGCGGTTCTCCGGTCCCTATCCGGATCCGGAATCAAGGTCACCGTGGATCTCCCCAACGAGCAACTCATGTTGGCAGCGAAGAAACGCTCCTTCGCACTCTCGTGGGTTGAGCGAAACGTCGTCGTTTATCACCCCAAAACCCAAATCGAAGCCATCGCGGTGGGCAACGAAGTCTTCGTGGACCCCAAAAACACCACCAAGTACCTCGTCCCCGCCATGAGAAACATCCACAAAGCCCTCCTCANCTACAACCTCACCTCCTTCATTAAAGTCTCTTCCCCAATCGCACTCACCGCACTCGGATCCTCCTACCCGTCATCTTCAGGGTCATTTCGACCCGAACTCGTCGAGCCCGTTATAAAGCCCATGTTGGACTTCCTCCGCGAAACGGCGTCGTTCCTTATGGTTAACGTGTACCCNTTTTTTGCCTACGTGTCAAACGCTGACGTCATTCCATTAAACTACGCCCTGTTTCGCGAGAACCCCGGAAGCGTGGACCCAGGGAACGGGTTAAAGTACTTCAACCTCTTCGACGCGCAAATCGACGCCGTNTTCGCGGCTCTGTCTACTCTCAAATACGACGACGTTCGGGTCGTGGTGAGCGAAACGGGTTGGCCCTCTAAGGGAGACAGTGATGAGGTGGGTGCGTCCCCACAGAACGCNGCAGCGTACAACGGTAACCTCGTTAAGAAGATACTTACCACCAACGGTGGGACCCCCTTGAGGCCCAACGCGAATCTCACCGTTTATCTGTTCGCGCTTTTCAACGAGAACCAGAAGGTGGGACCCACCTCCGAGAGGAACTTCGGGCTGTTTTACCCTGACATGACGAAGGTTTACGACGTTCCGTTAACGGTGGCGGGGCTGGGGATGAAGAAGGGTTACGGTGTTAACGGNGGAGTTAATTAAATATTTTACTATTAAAGAGGAATTATATTTCCCAAAGGATAGTGAAAGATGAAGAGGATTGATCACATGTACAACATTGTGGCATCCATGTTTGGATTTGGTTGATTTGAATTTTGTAAGTTATGAGAGGATGGAGGAGGGAGACTAGAAAATTTATTCATTGTTTTGTGATCACTTGGAACTGTCAGCTTAATTAACTTGGGAAATTAAATTGTTTGTAACCTAAGTTTCATTTTGCAAATATATTTTGTGACTTGTATTGTTCGAATAGTAATCATCGTCTTATCAATATTTTTGTTTGAATAAAATAGAGTTGCCTTTTTCCGCCACTGATAGTCTAAAGGCCGCATTTGAGTAACTAGATCAACTAAGTATTTACTTAATAATTACTCATC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02006	23251	24897	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH17,CBM43

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002006s00031341.1	PF00332.13	Glyco_hydro_17	24	342	6.00E-100

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	33.822
SRR1783600	control	33.754
SRR1783602	moderate drought stress	22.087
SRR1811619	moderate drought stress	20.758

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	93.642
DRR006520	Root Summer glycyrrhizin high producing strain	93.603
DRR006521	Root Winter glycyrrhizin high producing strain	0.367
DRR006522	Root Winter glycyrrhizin high producing strain	0.429
DRR006523	Root Summer glycyrrhizin low producing strain	17.299
DRR006524	Root Summer glycyrrhizin low producing strain	17.455
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.973
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.023

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	87.144
SRR2868004	Drought Stress (root)	19.853
SRR2967015	Control (root)	45.027

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.158
SRR9715740	Leaf	0.376
SRR9715741	Leaf	1.162
SRR9715739	Root	43.255
SRR9715742	Root	15.647
SRR9715743	Root	22.480

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	64.685
SRR8749028	MeJA induced 9h	51.128
SRR8749029	MeJA induced 9h	33.564
SRR8749030	Uninduced	0.756
SRR8749031	Uninduced	0.201
SRR8749032	Uninduced	2.020

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	79.040
SRR8400027	Control - Root	68.949