Gene detail

Gene detail information of Glyur002006s00031339

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G30550.1	1.00E-113	alpha/beta-Hydrolases superfamily protein
NR	XP_008382954.1	3.53E-162	PREDICTED: phospholipase A1-Igamma2, chloroplastic-like [Malus domestica]
COG	YP_007155256.1	9.00E-11	lipase class 3 [Anabaena cylindrica PCC 7122]
Swissprot	tr\|Q3EBR6\|PLA16_ARATH	4.00E-142	Phospholipase A1-Igamma2, chloroplastic (Precursor)
trEMBL	tr\|A0A061DP20\|A0A061DP20_THECC	2.00E-156	Alpha/beta-Hydrolases superfamily protein {ECO:0000313\|EMBL:EOX94574.1}

Sequence

Transcript Sequence

>Glyur002006s00031339.1
ATGGCCGCTTCCATCTCAACCATGCCCAATATCATTCCCTTGTCAAAATCCCCGCGCGAAGCTAGCATCTTCCCATCACATCACACTAAACTCCCAGTGCCACTATCCATTAGGAAACCAATTACCTTTAAATACAAGGCCAAGGCCTTTTCTGAAGGAGATGATGATATTGAAAAACGACGACAGCATAATCAACCGCTGGCTCTGGATGATATTTGGCGTGAAATCCAGGGCGAAAACGACTGGTTTGGTCTTCTGGACCCAATGGACCCGTTGATGCGATCCGAGCTGANCCGNTACGGGGAGATGGCCCAGGCCTGCTACGACGCCTTCGACTACGACCCATACTCCAAGTACTGCGGCAGTTGCAAGTACCCACGCCACCAATTCTTCGAGTCCATAGACATGGTCCACATCGGGTACACCCTCACGCGCCACCTCTACGCCACCGCTAAGCCCAACCTCCCTCACTTCTTCAAGTTCTCGCGGTGGCCCAAGACGTGGAGCAAGTACGCCAACTGGATCGGTTACGTCGCCGTCTCCGACGACGCCACCAGCAACCGTCTCGGCCGCAGAGACATCACCGTGGCGTGGCGGGGAACAGTGACTAGCCTCGAATGGATCACTGACCTCACGGTTTCCCTCGTACCCGTCTCGTTCCCCGAATACGCCGCCATGGTTGAAACCTGTTACTTGGAGCTCTACACGAACAAGGAAGATCACGCGAGCCGGTTTTGCAAGTACTCTGCGAGGGAGCAAGTACTGGTGGAGGTGAAGCGTTTGGTGGAGAAGTACCGTGGTGAGGATGAGGAATTGAGCATTACCATCACGGGACACAGTTTGGGGAGCGCGTTGGCCATATTGAGCGCCTATGACATTGCGGAAACCGGGTTGAACGTGGTGGTCAACCGGCGCGTGCCGGTTACGGTGTTTTCGTTTGCGGGGTCGAGGGTGGGAAACGCGGGGTTCAAGGACAGGTTGACGAGGCTGGGGGTGAAGGTGTTGAGGGTGGTTAACGTGCACGACGTTGTGCCCAGGATGCCTGGGCTTGTCTTCAATGAAAAAACATCGACCGTGCTGCCGCAGGTTTACTCGCATGTTGGGGTGGAGTTGCGGTTGGACCATAAAGACTCGCCGTTCCTCAAGGCTGATGTCGACCCTGCCTGTGCCCATAACTTGGAGATGATAGTTGTATGTGTCACATAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02006	13571	16176	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006629 lipid metabolic process

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002006s00031339.1	PF01764.20	Lipase_3	196	350	2.10E-37

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.232
SRR1783600	control	9.480
SRR1783602	moderate drought stress	6.759
SRR1811619	moderate drought stress	7.048

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.980
DRR006520	Root Summer glycyrrhizin high producing strain	1.007
DRR006521	Root Winter glycyrrhizin high producing strain	1.098
DRR006522	Root Winter glycyrrhizin high producing strain	0.937
DRR006523	Root Summer glycyrrhizin low producing strain	2.350
DRR006524	Root Summer glycyrrhizin low producing strain	2.341
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.063
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.038

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	16.265
SRR2868004	Drought Stress (root)	18.795
SRR2967015	Control (root)	18.188

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.111
SRR9715740	Leaf	0.052
SRR9715741	Leaf	0.055
SRR9715739	Root	9.344
SRR9715742	Root	6.013
SRR9715743	Root	6.954

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.872
SRR8749028	MeJA induced 9h	2.257
SRR8749029	MeJA induced 9h	0.693
SRR8749030	Uninduced	1.280
SRR8749031	Uninduced	0.232
SRR8749032	Uninduced	0.655

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.506
SRR8400027	Control - Root	4.496