Gene detail

Gene detail information of Glyur002004s00032219

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G24540.1	5.00E-04	AGAMOUS-like 24
NR	AFA37966.1	1.09E-19	SVP4 [Actinidia deliciosa]
Swissprot	tr\|O82794\|AGL24_ARATH	3.00E-12	MADS-box protein AGL24
trEMBL	tr\|H6BF96\|H6BF96_ACTDE	4.00E-20	SVP4 {ECO:0000313\|EMBL:AFA37966.1}

Sequence

Transcript Sequence

>Glyur002004s00032219.1
AGTATCTTCTTTTCCCCTCTTTAATTTCTCTCTGCGATACGCCGATACCACTTAATTCTCAAAAATTCTCTCTCTCTCTCTCTCTCTCTCTCTTCTCTGGATTTTGGAAACCATCTTTGTTCTGCAGTTGCAAGGGATCGATGATAACAAGAGAAATACAGAAAGATGATTGATGGTTACTAGTACAGTACTCCAAAGAGGAAGAGATCTCAGGGAGGCACATGATCATGGTTCAACAACCCCTTTGTGATGCTGAGTTTGCTCTCAACAATCTCATTAGTCTTCTGATCTACTACTGGCAAGCTTTCTTTCATATATATCTTTGCTGGTCTTACCAGGGCGCTCAAAAACTTTCCCAGTGCTGCTACCTATACCTTTTTCCTCCACTCTTTTCTGCTGGGTGTACTCGGGGCGCGGTGGTTGCAGGATCCATGCGGCGGCACTCAATATATATGAAGTCGACAAGGCTCATCAACATTGATTGATCACAGCCTCAGCCTATAAACGAAAAGNTCAGAGGATCGAAGCTGAAACTTACCCAGAATAATATCTTGGCAGCTGTAATTAACAGCAATCTGTTCTTTTTTTTTTTTTTGTTGGAGTTCAGGATATTTTGTTGGAGACAGAGCAGCATAACAGCAATCTGATCTGAAATTTCCACAAAAAATAAATAAAATAAAAGTAAATAAATGCTGGCCGTTTCTACATTGTTCGTCTCTCATCAGCTCCCATTGACTCCCCATTGGCTGAAACAAGAATATTATATGACTCACGCGTGGAGCAGGTATTTGAAAGGTATAATTTGCATCCAAGCAATGACAAATCACAAGATTCATCCCGAGAGCTTCAGTACTACCCATGACTACTTGGTGAAGTGTGAGGAAGTGGAAGTTAAGACTCGTGAATTGAGAAACTTGAATGGGGAAGAGTTGCAAGGATTAAAACTTGGAGAATTAAATAAACTAGAGAAACTAATAAGAAAAGCTTTGAACCGTGTTTCAAAAGCAAAGGATGAAAGAATGGTACAGGATATCACAGCGCTCAAGAGAAAGAGAGTTGAACTGCTGCAGGACAACCATCGATTTAAGAAGGTACAAAGTTCTGCAAACGATCAAGGACAGTCATCCAAGTCAACCACGATATGCAGCCCATCAAATCGTGCTGAAGACACTGACAACCATGACGGTTCTCTCCCCTTGGGCTTGCTCGATCGTGTAAAGAATTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02004	13302	31596	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

cellular_component
GO:0005634 nucleus

molecular_function
GO:0003700 transcription factor activity, sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002004s00032219.1	PF01486.12	K-box	67	133	2.60E-10
Glyur002004s00032219.2	PF01486.12	K-box	150	218	1.20E-09

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.898
SRR1783600	control	1.902
SRR1783602	moderate drought stress	2.458
SRR1811619	moderate drought stress	2.399

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.960
DRR006520	Root Summer glycyrrhizin high producing strain	6.243
DRR006521	Root Winter glycyrrhizin high producing strain	371.381
DRR006522	Root Winter glycyrrhizin high producing strain	357.051
DRR006523	Root Summer glycyrrhizin low producing strain	4.026
DRR006524	Root Summer glycyrrhizin low producing strain	4.199
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.137
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.117

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.590
SRR2868004	Drought Stress (root)	3.206
SRR2967015	Control (root)	6.028

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.396
SRR9715740	Leaf	0.239
SRR9715741	Leaf	0.338
SRR9715739	Root	0.525
SRR9715742	Root	0.774
SRR9715743	Root	0.464

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.281
SRR8749028	MeJA induced 9h	0.415
SRR8749029	MeJA induced 9h	0.807
SRR8749030	Uninduced	12.611
SRR8749031	Uninduced	14.752
SRR8749032	Uninduced	8.418

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.014
SRR8400027	Control - Root	2.437