Gene detail

Gene detail information of Glyur001999s00039469

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G53380.3	9.00E-128	Plant protein of unknown function (DUF641)
NR	XP_006592534.1	0	PREDICTED: uncharacterized protein LOC100795678 isoform X2 [Glycine max]
trEMBL	tr\|K7LUS5\|K7LUS5_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA12G17960.4}

Sequence

Transcript Sequence

>Glyur001999s00039469.1
AAGGGTTTTAAAAAATAAAAAATAAATAAAAATAGAAAACCCAATCAATCACGCTTAAACCCTTCAGTCTCTTATTCAGAGGGCGACAACGACAGAGCCTGAGAAGAATAAGAANAAGAAAAAACAAGTGAACGGCACAAACATAACAAGTCTCTGAAGAAAATATTGGAATTCGGTGTCAAGAGGCTCATTTTTTNTTCTTTCCTTTTCCATTTCCATTCGTTCAGTTTCTTTCTTGTTCAGGGTATTACAAGTTCACACTTGGGGTTGTTCTGTTCTGACTCTGTTTTCTTGAGATATAAGTTTCACTATGAGAAGTTATTAACGTCTTTGTTCACTCCTCTGATTTCTCGTGGATATTTCTTAAGTGGGGTGAAAACAGTGAATGGCAGTGAAAATTTGTTGTTTGTTCTGATGGAATCGGTCAAACCTTCAGAAGTGACACCAAGAAAGAGTAAACTGGCTCGCACTTTCGCCAAGGTTCTTCATGTTAGAGCAGTGACTGGAGTTGCACCAGTTGATGGACTGAAGAATGTAAAAGTCGATGCAAATCTCAACAATGAAGGAAACAACAAGAAGGAAGATGGAGAGGTTCAGAAGAGAGTTTCCACAGAGGCATTGCTTGCAAAAGTCTTTGCTAGCATTTCAAGTGTGAAAGCCTCATATGCTCAACTGCAGTATGCTCAGTCACCTTATGACCCAGATGAAATCCAAGTTGCTGATAAATTCATAGTCTCGGAGTTGAAGACCTTGTCTGAGCTAAAGCAATGCTACTTCAACAGACGGTTCGATCCTTTGCCAGAGAAAGCGATTCTTGCAGCTGAATTAAAGGAGCTGCAGAGTGTTAACAGAACCTATGAGGTCATGGGGAAGAAACTGGAATCGCAGGCGCGGCTCAAGGAATCCGAGATCGCATTCCTCAGGGAGAAGCTGGAGGAAGCAAATAAGCAGAACAGGTCAATTGAGAAGAGGTTAAGTAAAAGTGGGTCATTATCATCATCATCATCTTCCTTTGATAATCTCCATTTGTCAGGACTAAGTCCTACCCATTTCGTTGCGGTCCTTCGCCACGCGGTTCGGTCCATTCGAGCCTTTGTGAAGCTTTTGGTGAATGAGATGAGATCTGCCNGTTGGGACATCGATGCTTCGGTGAATGCCATTGTACAGGATGTGGTTTACTATAAAGAAGACCACAAGTGTTTCGCGATCGAGTCCTTTGTTTGCAGGGAGATGTTCGATTCTTTCAACTCCCCCGATTTCTCTATCCCCAATGAGTCCCTCCCAGATAGGAACAAGCGAGAACTGTTCTTTGAGAGGTTCAATGAGTTGAAATCTGTGAAAGCAAAGAAATTCCTTGCTGTGAAACCAAAATCGCCATTTGCAAAATTCTGCAGGGTGAAGTACTTGAGACTTGTTCATCCCAAAATGGAGGCATCTTTCTTTGGTGACCTTAGCCAAAGGAGCATGGTGAATGCTGGTGAATTTCCAGACACAAGCTTCTTCACTTCATTTGCTGAGATGGCGAAGCGCGTGTGGCTACTACATTGCTTAGCTTTTTCTCTTGAGCCTGAGGCTTCTATCTTTCAAGTGGGGAGAGGGTGTAGATTCTCTGATGTGTACATGGAGTGTGTGAATGATGAAATGATGCTGCCAGTGGAATCTGAGTCACAANAAGTTGCTTTCACCGTAGTTCCAGGGTTTAAGATTGTCTTCTTCCTTCAAGTACTAAGGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01999	22277	28060	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001999s00039469.1	PF04859.7	DUF641	58	187	1.10E-42
Glyur001999s00039469.2	PF04859.7	DUF641	125	254	1.50E-42

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.455
SRR1783600	control	2.466
SRR1783602	moderate drought stress	2.232
SRR1811619	moderate drought stress	2.108

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.383
DRR006520	Root Summer glycyrrhizin high producing strain	3.596
DRR006521	Root Winter glycyrrhizin high producing strain	7.580
DRR006522	Root Winter glycyrrhizin high producing strain	6.915
DRR006523	Root Summer glycyrrhizin low producing strain	18.627
DRR006524	Root Summer glycyrrhizin low producing strain	18.476
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.927
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.574

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	16.930
SRR2868004	Drought Stress (root)	22.704
SRR2967015	Control (root)	14.228

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	30.931
SRR9715740	Leaf	34.749
SRR9715741	Leaf	62.140
SRR9715739	Root	7.525
SRR9715742	Root	17.362
SRR9715743	Root	15.357

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	28.070
SRR8749028	MeJA induced 9h	42.854
SRR8749029	MeJA induced 9h	43.438
SRR8749030	Uninduced	23.359
SRR8749031	Uninduced	42.686
SRR8749032	Uninduced	28.787

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	10.791
SRR8400027	Control - Root	9.142