Gene detail

Gene detail information of Glyur001997s00042117

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G12880.1	9.00E-64	nudix hydrolase homolog 12
NR	NP_001241033.1	7.20E-141	uncharacterized protein LOC100794003 [Glycine max]
COG	YP_001412181.1	5.00E-15	NUDIX hydrolase [Parvibaculum lavamentivorans DS-1]
Swissprot	tr\|Q93ZY7\|NUD12_ARATH	5.00E-79	Nudix hydrolase 12, mitochondrial (Precursor)
trEMBL	tr\|C6THS8\|C6THS8_SOYBN	3.00E-141	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA16G05080.3}

Sequence

Transcript Sequence

>Glyur001997s00042117.1
CTCTCTTGCTCTGTTTTCGTGGAAGCCTTTTCTTCCTTTGTTTTCATTTTGCCGAAACANGGAACTCTTCTTCTTATCCTTCTATCTTTCCATTTCTTGTTTCGTTCTGAAAGAATAAAAATCACCATTCTCATTAAGGGGTTTATTTTCCTTGTGAAACTTTAACGACTTGAATCTCCATTTTACCCCATAAAAACGGTTTACACGTGTTGGCCAAAAACATAAACCTTTNTATAGATGGTTCCTTCCTCTTTCATGCAAGAGCTTTTAGATGATTCCTTTTGGTTCTGCCCAATGAAAGCTTCTCTGTCTGTTGTTGCGTTCGAGATTTAAGGAAAAAGCATAACCTGGTTTTTGTTTTGTCTTAGAATCTATGTCGTCTGTGCCAGCACGAACGGGGAGACAAAGACAACGTTACGAGAACAACCTGCGCCTTGTCTCTGGATGTATTCCCTATAGATGGAGAAAGGACAATGCGGATCAGATGGGAAAAACTGAGGAAATAATAGAAGTACTTATGGTTTCTTCACCAAAACGTGATGACCTTGTATTTCCAAAGGGTGGATGGGAGGATGATGAAACTGTTACAGAAGCAGCTTGTCGTGAAGCTTTAGAAGAAGCAGGAGTTAAAGGAATACTAAGAGAAATTCCATTAGGAATATGGGAGTTCAAAAGCAAAAGCAGTCAGGACTTGTGTAGCATGGAAGGAGGCTGCAGAGGATACATGTTTGCCTTGGAGGTCACTGAAGAACTTGAGATNTGGCCAGAGCAGAGAAACCGTGCTCGCCAATGGTTAANCATAAAAGAGGCATTTAGACTCTGCCGATATGACTGGATGTGTAATGCACTGGAGGAGTTTTTGAGAGTTATGACAGAGGACAGAAAGCTTGAGAAGCAAGACAAGAACAATGTTGCTCCCTCTTCACCTTCAGTTCTAGTAACAGATGTTTCAGAATGTCAAAGCATGTCATCACCAAACTGCTATAAAAGATCCTCTACTATGCAGCACCATGGCATGCCTTCTAAAGCCAATAATCTCCTGCAACGCGCTTCTCAAGAGATAGCGATCCGCTTTGGTTATTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01997	28274	34119	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0016787 hydrolase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001997s00042117.1	PF00293.23	NUDIX	39	160	2.30E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.933
SRR1783600	control	3.092
SRR1783602	moderate drought stress	4.461
SRR1811619	moderate drought stress	4.265

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.480
DRR006520	Root Summer glycyrrhizin high producing strain	2.648
DRR006521	Root Winter glycyrrhizin high producing strain	2.698
DRR006522	Root Winter glycyrrhizin high producing strain	2.504
DRR006523	Root Summer glycyrrhizin low producing strain	9.630
DRR006524	Root Summer glycyrrhizin low producing strain	9.464
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.813
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.809

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	57.147
SRR2868004	Drought Stress (root)	66.986
SRR2967015	Control (root)	79.245

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	51.148
SRR9715740	Leaf	58.359
SRR9715741	Leaf	54.776
SRR9715739	Root	4.847
SRR9715742	Root	14.153
SRR9715743	Root	13.005

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	50.158
SRR8749028	MeJA induced 9h	94.842
SRR8749029	MeJA induced 9h	119.952
SRR8749030	Uninduced	77.745
SRR8749031	Uninduced	279.779
SRR8749032	Uninduced	245.407

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	15.507
SRR8400027	Control - Root	14.507