Gene detail

Gene detail information of Glyur001994s00033876

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G26630.1	3.00E-127	Tetratricopeptide repeat (TPR)-like superfamily protein
NR	XP_003548483.1	0	PREDICTED: pentatricopeptide repeat-containing protein At3g26630, chloroplastic-like isoform X1 [Glycine max]
Swissprot	tr\|Q38959\|PP257_ARATH	1.00E-154	Pentatricopeptide repeat-containing protein At3g26630, chloroplastic (Precursor)
trEMBL	tr\|K7MF69\|K7MF69_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA16G04920.2}

Sequence

Transcript Sequence

>Glyur001994s00033876.1
ATGAAGGTGGCATGCTGCACCCCAGATATCATCAACAACACACCACCCCAATTTAAAACTCCAAAAACAAGGTTTAATTCAGAGGAAGCTCTTGTCTTTCTTCAAAAGTGCAACAATTTCAATCATCTCAAGCAAGTCCATGGCAGAATAATCCGTTTTGGTCTCAATTATGACCAGTTACTTATCAGGAAGCTACTTCAGCTCTCTTCTTCCTATGGTAAATTGAACCATGCCACTTTGTTATTTGATCAACTCAATGCCCCAGATACCTTCACATGGAATGTCATGATTAGAGCCTATAACACAAGTGGTTCCCCTGAAAAAGCTCTTCTCTTGTTTAAGGACATGATGTGCCAGGGCTTTGTACCTGACAAATTCACATACCCTTTTGTGATTAATGCTTGCATTGCTTCTTCTGCACTTTATTTTGGAAGGGCAGCACATGGTTTAGCAATCAAAATGGGGTTTTTTTGGAGTGATGTTTATGTGCAGAACAATGTGATGAATCTCTACTTCAAGTGTGAGGATGGGGATAGTGGGTGGAAGGTGTTTGATAAAATGCGTGTGAGGAATGTGGTCTCTTGGACCACCACGATTTCTGGGCTTGCTGCTTGTGGGAAACTCGACACTGCACGGGAAGTGTTCGNGCGGATGCCTTGTAAAAACGTTGTTTCTTGGACGGCAATGATTGATGGGTATGTGAAACACAAGTACCCATTTGAGGCTTTTGATTTGTTTGAAAGAATGCAGATTGATAACGTGAGGCCAAATGAGTTCACTTTGGTGAGCTTGATCAGAGCTTGTACTGAGATGGGTAGCTTGAAATTGGGTAGATGGGTGCATGATTTTGCTCTAAAGAATGGATTTGAGGTTGGACCTTTCTTGGGTACTGCTCTTATAGACATGTATAGCAAATGTGGCTGTTTAGAGGATGCTATTGCAGTGTTTGGGAGGATGNAAGTGAGAAACTTGGCTACTTGGAATACCATGATCACTAGCTTGGGTGTGCACGGGTTGAGGAATGAAGTCCTAGCCCTTTTTGAAGAAATGGAGAAGGCAAATGTGGTTCCGGATGCTATCACTTTTGTAGGTGTTTTAAGTGCTTGTGTTCAAATGAATAGCCTTGAAGAAGGTCAGAAGTATTTCACTCTCATGACAGAACATTATGGTATAACACCTGTCTTGGAGCACTATACATGCATGGTCGAACTCTATACTCGTGCTGCTAATAATGAGTTGGATGAGATTGATCACACATTGGGGAACACAGTGTCATTGTCAATGAAAGCAAATCATGATGTTGCAGAATTGCTCCAAGAGAGGAAACTCACTGGTATTGATGACATAGAGAAACTCATACACAAGCATTGTGGGGATTTGGGTTTCTCAGAACTAGTTTTAGATCATTCCTCTATGAATGAGCTCCGATATCAGCCAAACAAGTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01994	36449	37894	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001994s00033876.1	PF13041.1	PPR_2	88	135	8.60E-11
Glyur001994s00033876.1	PF01535.15	PPR	165	192	0.063
Glyur001994s00033876.1	PF13041.1	PPR_2	221	268	8.70E-14
Glyur001994s00033876.1	PF13041.1	PPR_2	323	370	1.50E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.555
SRR1783600	control	0.607
SRR1783602	moderate drought stress	0.296
SRR1811619	moderate drought stress	0.328

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.267
DRR006520	Root Summer glycyrrhizin high producing strain	0.329
DRR006521	Root Winter glycyrrhizin high producing strain	0.232
DRR006522	Root Winter glycyrrhizin high producing strain	0.250
DRR006523	Root Summer glycyrrhizin low producing strain	0.398
DRR006524	Root Summer glycyrrhizin low producing strain	0.545
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.188
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.373

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.571
SRR2868004	Drought Stress (root)	0.297
SRR2967015	Control (root)	0.368

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	8.793
SRR9715740	Leaf	11.965
SRR9715741	Leaf	5.818
SRR9715739	Root	0.210
SRR9715742	Root	0.573
SRR9715743	Root	0.447

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.308
SRR8749028	MeJA induced 9h	1.399
SRR8749029	MeJA induced 9h	1.789
SRR8749030	Uninduced	0.770
SRR8749031	Uninduced	13.358
SRR8749032	Uninduced	5.506

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.540
SRR8400027	Control - Root	0.433