Gene detail

Gene detail information of Glyur001993s00044747

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G26870.1	0	non-specific phospholipase C2
NR	KEH33501.1	0	non-specific phospholipase C4 [Medicago truncatula]
COG	YP_003881454.1	5.00E-53	phospholipase C 4 [Dickeya dadantii 3937]
Swissprot	tr\|O81020\|NPC2_ARATH	0	Non-specific phospholipase C2 (Precursor)
trEMBL	tr\|A0A072UVR5\|A0A072UVR5_MEDTR	0	Non-specific phospholipase C4 {ECO:0000313\|EMBL:KEH33501.1}

Sequence

Transcript Sequence

>Glyur001993s00044747.1
CTGGAAAGGGAAAGGGGGTCAAAAGAGAAAGAAAAATCTCACCCGCAAAGTGCATTCATTCAAGGAACATTGAACACAAAATCCAAGGATTCCATTTATTGCTACGTAATCCACAACAAACTACCTCACAAAGCTGAGCTATTTTGTTTTCCCAATCAAGCAAATACACCATTGAAGTTTCCCACAAAAGCTCACACAATATCATTCCCCACCCCTCTCTCTCTCTCTCTCTCTCTTTAATATATATCTATCTATCTTCTCACCAGACAAACACAACCCCAAAATTCTCATTCCACTCTTCCCCTCAATCACTCTCTCCAGCAACATTGTAGTAAAATATAAAAGGGAAAAAAAAACAGAGAGCAATGGGTACCCGTACCCATATCCTCTTCTTTTACTTCTCCGTTTTGCTTCTCAGTTACTCCCCAAGTGGCGATGCAATTGGGAACCCGATCAAAACCGTCGTCGTTTTGGTGATGGAGAACCGTTCCTTTGACCACATGCTGGGGTGGATGAAGANGCTAAACCCGGCCATCAACGGNGTAAACGGGTCGGAGTCCAACCCGATATCAGTGACCGACCCGAATNCGAAGCGGTTCTTCTTCAAGGACCAGGCGCAGTACGTGGACCCGGATCCTGGTCACTCGTTCCAGGCCATCCAGGAACAGATATTCGGGTCGAACGACACCTCGCCCGACCCGGCTCCAATGAACGGGTTCGCCCAGCAAGCTTACTCAATGGACAACACCACCACCATGTCTCAGGATGTCATGAATGGCTTCNACCCTGACATGGTTGCCGTTTACAAGACACTTGTCTCTGAGTTTGCTGTGTTTGATAGGTGGTTTGCCTCGGTGCCAGCCTCCACTCAGCCTAACCGTCTCTACGTGCACTCGGCGACTTCGAATGGTGCCACCAGCAACGTGGCGTCACTGCTGATCAAGGGCTATCCACAACAAACAATTTTCGACAATCTCTATGACGCCGGATTCGACTTCGGAATATACTATCAGAATATTCCAGCNACACTATTCTACAGGAACCTAAGGAAGCTCAAGTACGCGCTGAAGTTCCACCCATACGACGTGTCGTTTAAGCGGCACGCAAAGGAAGGGAAGTTACCGGGCTATGTTGTGGTGGAGCAGCGGTACATGGATACTAAGTTGCTCCCAGCGAATGACGACCACCCNTCGCATGACGTGTACCAGGGACAGATGTTCGTGAAGGAGGTGTACGAGACGCTGAGGGCGAGCCCGCAGTGGAACGAAACCCTGTTCGTGATCACGTACGATGAGCATGGAGGGTTCTATGATCACGTGCCTACGCCAGTACGTGGGGTACCCAGCCCTGATGGGATTGTGGGGCCACTGCCATTCAACTTCACCTTTGATAGGTTGGGTGTTCGGGTTCCTACTATTGCTATCTCACCTTGGATTGAAAAGGGCACCGTTGTTCATGGGCCAAACGGGTCGCCAACTCCTACATCACAGTATGAACACTCATCCATTCCAGCAACAGTGAAAAAGATCTTCAATTTGCCTTCATTTCTGACCAAGAGAGATGAATGGGCTGGCACCTTTGAGGAGCAACTTCCAACCCCTGTAAAGTTAAGGAAGAGAGAGGCTAATGAAGATGGTAAGCTCAGTGAATTTCAGCAGGAGTTTGATCCAACTTGGAGCAGTGCTTAAAGGAGACGACATCTTCACTAGTTATCCAGATACAATAGGGAAGGACATGACTGTTAAGCAAGGGAAAGATTACATGGACGATGCAGTTACAAGGTTCTTTGAAGCATCTCGTTATGCAACGAAAATGGGTGTGAGTGAAGAACATATAGTTCAGATGAAGCCTTCTTTGACCACAAGATCATCCAAATCTGCAAACAAAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01993	570	7297	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01114	plcC	EC:3.1.4.3	Inositol phosphate metabolism	map00562
			Glycerophospholipid metabolism	map00564
			Ether lipid metabolism	map00565
			Quorum sensing	map02024
			Thyroid hormone signaling pathway	map04919

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function

GO:0003824 catalytic activity

GO:0016788 hydrolase activity, acting on ester bonds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001993s00044747.1	PF04185.9	Phosphoesterase	30	392	1.20E-102

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.007
SRR1783600	control	6.136
SRR1783602	moderate drought stress	6.678
SRR1811619	moderate drought stress	6.305

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	11.976
DRR006520	Root Summer glycyrrhizin high producing strain	12.226
DRR006521	Root Winter glycyrrhizin high producing strain	2.264
DRR006522	Root Winter glycyrrhizin high producing strain	2.223
DRR006523	Root Summer glycyrrhizin low producing strain	10.427
DRR006524	Root Summer glycyrrhizin low producing strain	10.583
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.464
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.737

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.023
SRR2868004	Drought Stress (root)	1.302
SRR2967015	Control (root)	2.952

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.835
SRR9715740	Leaf	6.469
SRR9715741	Leaf	4.277
SRR9715739	Root	1.717
SRR9715742	Root	4.714
SRR9715743	Root	4.738

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.199
SRR8749028	MeJA induced 9h	25.597
SRR8749029	MeJA induced 9h	5.926
SRR8749030	Uninduced	1.098
SRR8749031	Uninduced	0.387
SRR8749032	Uninduced	0.696

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.596
SRR8400027	Control - Root	2.691