Gene detail

Gene detail information of Glyur001992s00038070

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G51740.1	0	inflorescence meristem receptor-like kinase 2
NR	XP_003516400.1	0	PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase IMK2-like [Glycine max]
COG	YP_001192956.1	2.00E-48	two component regulator [Flavobacterium johnsoniae UW101]
Swissprot	tr\|Q9SCT4\|IMK2_ARATH	0	Probably inactive leucine-rich repeat receptor-like protein kinase IMK2 (Precursor)
trEMBL	tr\|I1J7I3\|I1J7I3_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA01G31590.1}

Sequence

Transcript Sequence

>Glyur001992s00038070.1
CCTTCACTTGACTACTCTCTGATCAGCTAAGCCTGAGAAGTGAAGAAAAGAAAGAACCTGTTTTTGTTCCTTCTCTTTAGCCAATAGACCATTGTTGTTCTCACTTTCCCACATTCATATGGGAAACAACAGTGACAATAAAGGGAAGAATTGGAGGAGGAGGAACCATGAGGGTGGTGGTTTCAATTTCATTGGTTTATTACCACCCCTTTTCATGTTTCTTATGCTAGCTTTGGCTTCCACAATTGAACCTGTCTCGGCCCAAATGTGGGATGGGGTGGTTGTAACTCAAGATGATTTCCAAGCACTAAGGGCAATTAAGGATGAGTTGATTGACACCAAAGGGGTTCTGAGAAGCTGGAATGAAAGTGGTATAGGTGCTTGTTCAGGTGGTTGGGTAGGAATCAAGTGTGTGAGGGGAGAGGTTATTGCAATTCAGCTTCCTTGGAGAGGCTTAGGTGGCAGAATCTCAGAGAAAATTGGGCAGCTTCAATCTCTTAGGAAGCTAAGTCTCCATGACAATCTCATTTCTGGTCCCATCCCTTTGTCCCTTGGCTTCCTTCCTAATCTAAGAGGAGTTTATCTCTTCAACAACAGGCTCTCAGGTTCTATTCCTCTTTCCATTGGTAGCAATTGTCCAATGCTTCAGTCTTTTGATGTTAGCAACAATAACCTCACAGGNAAAATCCCTCCCAGTTTAGCAAACTCCACTAGGTTGTTCAGGATCAATTTGAGCTACAACTCACTCTCTGGTTCCATTCCTAGCAGTTTCTCTTTGTCTCCTTCATTAGCCATTCTTTCCCTCCAACACAACAATCTCTCTGGTCCTATCCCTTACTATTGGGGTGGAAAAAAGAAAGCTTCCTCACAACTTCAAGTTTTGACCCTTGATCACAATATCATCTCTGGAACCATCCCAGTTTCTCTAAGCAAGCTGGCTTTTCTTGAAAATGTTTCCTTGAGTCATAACCAGATTGTAGGGCCTGTTCCAAGTGAACTAGGTGCACTTTCAAGGCTTAGAGTTCTTGATCTTTCAAACAATGCCATCAATGGAAGCTTCCCTTCCAGCTTCTCCAACCTCTCTTCCCTTGTTTCATTGAAACTAGAGAACAACCAACTTGAAAACCATGTCCCAGATGGTTTGGAAAGGTTACACAACCTTTCTGTGCTTAACCTTAAGAACAACAAGCTTGATGGTCAAATCCCATCAACAATTGGAAACATCTCAGGAATTAGCCAAATTGATCTCTCTCAGAACAAATTCTTTGGAGAGATACCAGATTCTCTTACTAAACTAGCAAATCTCAGTTCTTTCAATGTCTCCTACAACAACCTATCTGGTCCTGTACCATCTCTACTTTCAAAAAGATTCAATGCTAGTTCCTTTGCAGGGAATCTTGAGCTATGTGGGTACATAAGTTCAAAACCATGCCCTTCTTCACCCCCACCTCATAACCTTCCAGCTCAATCACCAGAGGCTCTTTCCAAGCCACACCACCATAAATTAAGCACCAAGGACATAATCCTCATAGTAGCAGGTATTCTATTGTTGATTCTGCTATTACTGTGCTGCTTTTTGCTGTGTTGTTTGGTCAGGAAAAGAGCTGCTTCAAGCAGAAAGAGTAGCAAGTCTGCTAAGGCTGCAGCTTCTGCTAGGAGTGTTGAGAAAGGTGGTGGTGCTACTGCTGGTGGTGAAGTTGAATCAGGAGGTGAAGCTGGTGGGAAATTGGTTCACTTTGATGGACCTTTTGTGTTCACTGCTGATGATCTTTTGTGTGCCACTGCTGAGATAATGGGNAAAAGTGCATACGGGACAGCTTATAAGGCAACACTGGAGGATGGTAACCAAGTTGCTGTGAAGAGGTTGAGGGAGAAGACTACTAAAGGACACAAGGAGTTTGAAGCTGAGGTTGCTTCACTTGGCAAAATCAGACACCCAAATCTCTTGGCCCTTAGAGCCTACTATCTTGGACCCAANGGAGAGAAGCTTCTTGTCTTTGATTACATGACCAAAGGAAGCCTTGCATCATTCCTTCATGCTCGTGGGCCTGAAATTGTAATTGAATGGCCAACAAGGATGAAAATAGCAACAGGAGTCACTCGTGGAATGTGTTACCTCCATGACCAAGAGAGCATAGTACATGGGAACCTCGCCTCAAGCAACATACTATTAGATGAGCAAACAAACCCCCACATAACAGACTTTGGTCTCTCAAGGCTAATGACAGCATCAGCAAACACCAACATCATTGCAACAGCAGGGAGCCTTGGTTACAATGCACCAGAGCTTTCAAAGACCAAGAAGCCAAACACAAAGACTGATGTGTACAGCCTTGGTGTCATCATCTTGGAGCTTTTAACTGGTAANCCACCTGGGGAACCAACCAATGGCATGGACTTGCCTCAGTGGGTTGCTTCCATTGTGAANGAGGAGTGGACCAATGAAGTGTTTGATTTGGAACTCATGAGGGATGCACCTGCCATTGGGGATGAACTGCTTAATACACTCAAATTGGCTTTGCATTGTGTGGATCCTTCTCCAGCTGCTAGGCCTGAAGCTAAGCAAGTTTTGCAGCAGTTAGAGGAGATTAAGCCTGACTTGGTGGTGGATGTTGGGGANGATGATGGAGCTACTAAGGTCCAAACAACTGAATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01992	39920	43238	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.12.3

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005515 protein binding

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001992s00038070.1	PF08263.7	LRRNT_2	58	98	4.20E-08
Glyur001992s00038070.1	PF00560.28	LRR_1	176	196	0.08
Glyur001992s00038070.1	PF13855.1	LRR_8	298	358	1.80E-08
Glyur001992s00038070.1	PF00069.20	Pkinase	556	820	2.90E-41

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.553
SRR1783600	control	5.624
SRR1783602	moderate drought stress	3.598
SRR1811619	moderate drought stress	3.612

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.260
DRR006520	Root Summer glycyrrhizin high producing strain	9.025
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	2.235
DRR006524	Root Summer glycyrrhizin low producing strain	2.271
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.485
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.465

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	21.912
SRR2868004	Drought Stress (root)	7.209
SRR2967015	Control (root)	12.538

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.023
SRR9715740	Leaf	0.380
SRR9715741	Leaf	0.656
SRR9715739	Root	6.784
SRR9715742	Root	2.811
SRR9715743	Root	2.848

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	22.626
SRR8749028	MeJA induced 9h	16.857
SRR8749029	MeJA induced 9h	11.561
SRR8749030	Uninduced	0.072
SRR8749031	Uninduced	0.144
SRR8749032	Uninduced	0.761

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	20.093
SRR8400027	Control - Root	14.518