Gene detail

Gene detail information of Glyur001991s00035741

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G48050.1	Ku80 family protein
NR	XP_004506489.1	PREDICTED: ATP-dependent DNA helicase 2 subunit KU80-like isoform X1 [Cicer arietinum]
Swissprot	tr\|Q9FQ09\|KU80_ARATH	ATP-dependent DNA helicase 2 subunit KU80
trEMBL	tr\|G7JDE1\|G7JDE1_MEDTR	ATP-dependent DNA helicase 2 subunit Ku80 {ECO:0000313\|EMBL:AES87269.1}

Sequence

Transcript Sequence

>Glyur001991s00035741.1
GCTTCATGCTAGACGCGACCAAGCTGACCCTTTGAAGCGGGAAGAAGAAGGAAGATAAATGAGTNAGATGACCCACTATACATAACATTAGCATAACACAACATAACACAAGCCATCTTCTTCTGCAAGTTTGAGCTCACTCTCTTTTCCATTTCCCATCCATGGCTCGAAACAAGGAAGCGTTACTTTTGCTGCTTGATGTGGGTCCATCCATGCATTCTGTTCTTCCTGAAATTGAGAAAGTCTGTTCCATGCTTGTACAGAAGAAGCTGATCTATAACAAATATGATGAAGTGGGAATTGTCTTATTTGGAGCAGAAGAAGTGGGTGGATATCAGCATGTTGTGGTCTTGAAAAATATTAAAGTTGTGGATGGAGACATTATTGAGGCTTTACAACAACTGCCTCGTGGAACTACTGATGGTGATTTTCTTGATGCTGTCATTGTTGGCATGGATATGTTAATAAAAAAATTTGGAGAAACTAACAAGGGAAAGAAACGTCTCTGTCTTATTACAAATGCACAATGTCCAATAAAAGAACCTTTTGAAGGAACAAAAGAAGAGCAAGTTACCACCATTGCTAAACAAATGACTGTCCATGGTATGAGAATGGAAAGTATTATTNTGAGAGGAAAGCTTAGTCAAGACACAAACAAGGGAATAATGGATGAGAATGATCGTCTTTTAAATATTTTTNCAAAGGAAACATCGACAAGGTTGTTGTATGTGGAGAATCCAATTTCTTTGTTTGGTGCTCTCAAAACCCGAAATATAACTCCAGTTACAATTTTCAGAGGGGATCTTGAATTCAGCCCAAAACTGAGGATTAAGGTAATGGTATACAAGAAAACAGCAGAAGAGAAATTTCCAACTTTGAAGAAATATTCTGATAAGGCTCCTCCAAGTGATAAATCTGCTACACATGAAGTCAAAGTAGATTATGAGTACAAGAGTTCTGAAGATCCTGATAAAGTTGTCCCTCCAGACCAAAGAATTAAAGGTTATCGATATGGGCCTCAAATAGTTCCTATATCCTCTGCTGAATGGGAGTCTGTTAAGTTCAAACCGGAAAAGGGTGTGAAGCTTTTGGGATTTACTGATTCTTCTAATGTTTTAAGACACCAATACATGAAAGATGTCTATGTGTTCATAGCTGAACCTGGAAATACAAAAGCCATGCTTGCAGTTTCTGCAATAGCAAGGGCCATGAAGGAAATGAATAAGGTGGCAATTTTACGGTGCGTCTGGAGAAATGGACAAGGGAATGTTGTTATTGGGGTCTTGACACCCAATGTATCTGATAGAGAAAATATTCCTGATTCATTTTACTTCAATGTACTTCCTTTTGCTGAGGATGTGCGAGAGTTTCAATTCCCTTCTTTCACTGATTTCCCAGCATCGTGTCAACCAAATGAACGACAGCTAGAATCAGCAGCTAACTTCATAAAAATGCTTGATCTTGCACCACCTGGGAAAGAGGAAGTTTTGCTACCTGACTTCACACCAAATCCAGTCCTGGAGCGCTTTTATCATTATCTCGAGCTGAAATCAAAGCATCCAGATGCTGCAGTACCTCCTCTTGATGACACGCTCAAAAAAATCAGAGAGCCTGATGCTGACCTGTTTTTGCAAAACCAATCTGTGACGGACTCATTTCGTAGGTCCTTTCAGCTGATGGGAAATCCCTTGAAAAAGTCAAGGCGTTTATTGCGAGAAAATAGACCTTTTTCAAGTGATGAAGAGGGTAAAGGAAACATTNCTGAACAGCCTGCCAATCTCATTGAACATGCATCGATCAAAGTTGAGAACATCGGGAATCTGACTCCTGTCCAAGATTTTGAAACCATGATTTTGCGCCGAGATAGTCCAGACTGGGTTGCGAAAGCAATCAAGGATATGAAAAACAAAATATTTGACCTGGTAGAGGACTCCCATGAAGGTGATAACTATCCCAAAGCACTGGAATGTTTAGTTGCGCTTCGTAAGGGTTGCATCCTTGAGCAGGAACCGAAACAGTTCAACGATTTCCTTAGACATCTTTGCAATTTCTGTCAAGAGAAAAACCTCCAAAGTTTTTGTGAATATCTTGTTTCTAAGGGACTCACGTTGATCTCCAAAACAGAAGCTGTAGACAGTGAAGTTACTGATGATGAAGCCAGAAGTTTCTTGGTTAAATCTGAACCCAAAGTTGAGTAGTTCCTTCACTATTTGTGCTGAAACAATTGAGGGCTTCATTTTTATGCCCTTGGCAAAACACAGGAATACA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01991	32009	40761	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0000723 telomere maintenance

GO:0006303 double-strand break repair via nonhomologous end joining

GO:0006310 DNA recombination

cellular_component

GO:0005634 nucleus

GO:0043564 Ku70:Ku80 complex

molecular_function

GO:0003677 DNA binding

GO:0003684 damaged DNA binding

GO:0004003 ATP-dependent DNA helicase activity

GO:0016817 hydrolase activity, acting on acid anhydrides

GO:0042162 telomeric DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001991s00035741.1	PF03731.10	Ku_N	7	155	2.60E-23
Glyur001991s00035741.1	PF02735.11	Ku	216	423	4.00E-40
Glyur001991s00035741.1	PF03730.9	Ku_C	445	528	7.50E-12
Glyur001991s00035741.1	PF08785.6	Ku_PK_bind	552	674	1.90E-45

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.085
SRR1783600	control	7.181
SRR1783602	moderate drought stress	9.912
SRR1811619	moderate drought stress	9.803

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.631
DRR006520	Root Summer glycyrrhizin high producing strain	9.293
DRR006521	Root Winter glycyrrhizin high producing strain	3.113
DRR006522	Root Winter glycyrrhizin high producing strain	2.864
DRR006523	Root Summer glycyrrhizin low producing strain	13.684
DRR006524	Root Summer glycyrrhizin low producing strain	13.489
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.159
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.169

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	47.776
SRR2868004	Drought Stress (root)	67.793
SRR2967015	Control (root)	40.538

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	10.212
SRR9715740	Leaf	14.917
SRR9715741	Leaf	14.411
SRR9715739	Root	1.664
SRR9715742	Root	4.491
SRR9715743	Root	4.826

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	33.361
SRR8749028	MeJA induced 9h	35.969
SRR8749029	MeJA induced 9h	23.653
SRR8749030	Uninduced	10.092
SRR8749031	Uninduced	7.960
SRR8749032	Uninduced	6.347

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	24.748
SRR8400027	Control - Root	21.214