Gene detail

Gene detail information of Glyur001991s00035737.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G60820.3	1.00E-109	N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein
NR	XP_003532008.1	1.69E-162	PREDICTED: proteasome subunit beta type-1-like [Glycine max]
COG	NP_147297.2	2.00E-22	proteasome beta subunit precursor [Aeropyrum pernix K1]
Swissprot	tr\|O82531\|PSB1_PETHY	3.00E-155	Proteasome subunit beta type-1
trEMBL	tr\|I1KXF0\|I1KXF0_SOYBN	6.00E-163	Proteasome subunit beta type {ECO:0000256\|RuleBase:RU004203}

Sequence

Transcript Sequence

>Glyur001991s00035737.1
AATAAAACGAGTTGTTTAACCAGTTTTCTTTCACGACCACAAAAAAAAAGCAGCTTTCTTTCGTGTTTGCAAAGACAGATCCAAACCAATCCAATATTAAAAAAAGAAAAACTCGAAACGCAGCTCACACAGAAGGCTTGGCAAGAAAAAGCCCCGAGAGCTCCTTTTCAGTTTTCACGACCTAGTTCTTCATCGTTCTCCACTCCCATTTACCATGACCAAGCAGCAAGCTAATTGGTCTCCATATGACAACAATGGAGGATCTTGTGTTGCAATTGCTGGAGCGGATTACTGTGTGATCGCAGCAGATACGAGGATGTCAACTGGTTACAATATCCTCACTCGCGATTACTCCAAAATCTCCCAACTAGCTGAGAAATGTGTGATGGCTTCTTCTGGTTTTCAAGCTGATGTAAAAGCTTTGCAGAAGGTTTTGTCTGCTAGGCATCTGATATATCAGCATCAACACAACAAGCAAATGAGCTGCCCTGCAATGGCTCAGCTGCTTTCAAACACACTTTATTACAAACGCTTCTTTCCTTATTATGCTTTCAATGTTTTGGGTGGCCTTGACCATGAAGGAAAGGGATGTGTCTTCACATATGATGCTGTTGGTTCCTATGAGAGGGTGGGATATAGCTCTCAGGGCTCTGGATCCACACTCATTATGCCTTTTCTTGATAACCAGCTGAAGTCCCCTAGCCCACTCCTCTTACCTGCCAAGGATGCTGTTACTCCACTGTCTGAAACAGAAGCAGTTGATCTGGTCAAAACTGTCTTTGCATCNGCAACTGAGAGAGATATATACACTGGAGATAAGGTTGAAATTGTCATCCTAAATGCTAGTGGTATTCATCGCCAGTACATGGACCTAAGGAAAGACTGATGCTTTTTACACAAATTTATTTAGTTCATGCCAGACTTGGATTGAGAATGTTTGAAATGCTCCCAAAATTCTGAATGTGGTGCTGGGTCTGTTTCCATGATGAAGCGGAATTATGAAATGTGTTTCCAGTGAAACAAAGTTGAACCAGTGCTAGTCTGTTCTCATTTTAACTAGAATGTGCTTTCACTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01991	11966	15570	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K02732	PSMB1	EC:3.4.25.1	Proteasome	map03050

Gene Ontology

biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process

cellular_component
GO:0005839 proteasome core complex

molecular_function

GO:0004175 endopeptidase activity

GO:0004298 threonine-type endopeptidase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001991s00035737.1	PF00227.21	Proteasome	13	207	3.00E-35

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	57.489
SRR1783600	control	56.649
SRR1783602	moderate drought stress	40.737
SRR1811619	moderate drought stress	41.509

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	79.104
DRR006520	Root Summer glycyrrhizin high producing strain	78.410
DRR006521	Root Winter glycyrrhizin high producing strain	87.488
DRR006522	Root Winter glycyrrhizin high producing strain	86.013
DRR006523	Root Summer glycyrrhizin low producing strain	55.951
DRR006524	Root Summer glycyrrhizin low producing strain	55.763
DRR006525	Leaf Summer glycyrrhizin high producing strain	56.828
DRR006526	Leaf Summer glycyrrhizin high producing strain	54.554

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	146.410
SRR2868004	Drought Stress (root)	133.193
SRR2967015	Control (root)	115.921

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	41.622
SRR9715740	Leaf	50.744
SRR9715741	Leaf	49.904
SRR9715739	Root	38.258
SRR9715742	Root	41.187
SRR9715743	Root	43.196

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	128.203
SRR8749028	MeJA induced 9h	85.587
SRR8749029	MeJA induced 9h	105.314
SRR8749030	Uninduced	38.906
SRR8749031	Uninduced	30.026
SRR8749032	Uninduced	30.410

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	81.390
SRR8400027	Control - Root	75.666