Gene detail information of Glyur001990s00033287 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G23740.1 | 7.00E-42 | ribosomal protein S11-beta |
| NR | XP_008800685.1 | 1.72E-53 | PREDICTED: 40S ribosomal protein S11-like [Phoenix dactylifera] |
| COG | YP_002428859.1 | 9.00E-28 | 30S ribosomal protein S17P [Desulfurococcus kamchatkensis 1221n] |
| Swissprot | tr|P17093|RS11_SOYBN | 5.00E-55 | 40S ribosomal protein S11 |
| trEMBL | tr|V7CN37|V7CN37_PHAVU | 1.00E-53 | Uncharacterized protein {ECO:0000313|EMBL:ESW31627.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01990 | 47774 | 48698 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001990s00033287.1 | PF00366.15 | Ribosomal_S17 | 54 | 122 | 2.40E-27 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.380 |
| SRR1783600 | control | 5.457 |
| SRR1783602 | moderate drought stress | 4.094 |
| SRR1811619 | moderate drought stress | 3.996 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 10.457 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 11.561 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 8.385 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 9.098 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.307 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.171 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.279 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.736 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 8.412 |
| SRR2868004 | Drought Stress (root) | 5.071 |
| SRR2967015 | Control (root) | 4.596 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.149 |
| SRR9715740 | Leaf | 1.847 |
| SRR9715741 | Leaf | 1.973 |
| SRR9715739 | Root | 2.846 |
| SRR9715742 | Root | 2.312 |
| SRR9715743 | Root | 2.628 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 13.081 |
| SRR8749028 | MeJA induced 9h | 5.423 |
| SRR8749029 | MeJA induced 9h | 8.363 |
| SRR8749030 | Uninduced | 1.498 |
| SRR8749031 | Uninduced | 0.645 |
| SRR8749032 | Uninduced | 1.730 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.481 |
| SRR8400027 | Control - Root | 4.155 |