Gene detail

Gene detail information of Glyur001990s00033285

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G23740.1	3.00E-38	ribosomal protein S11-beta
NR	XP_007146683.1	1.22E-49	hypothetical protein PHAVU_006G060600g [Phaseolus vulgaris]
COG	YP_002428859.1	1.00E-23	30S ribosomal protein S17P [Desulfurococcus kamchatkensis 1221n]
Swissprot	tr\|P17093\|RS11_SOYBN	7.00E-51	40S ribosomal protein S11
trEMBL	tr\|V7BL53\|V7BL53_PHAVU	5.00E-50	Uncharacterized protein {ECO:0000313\|EMBL:ESW18677.1}

Sequence

Transcript Sequence

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01990	37401	38187	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006412 translation

cellular_component

GO:0005622 intracellular

GO:0005840 ribosome

molecular_function
GO:0003735 structural constituent of ribosome

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Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001990s00033285.1	PF00366.15	Ribosomal_S17	1	63	2.80E-27

Expression pattern

SRA Experiment	Description	TPM
SRR1783599	control	81.840
SRR1783600	control	85.918
SRR1783602	moderate drought stress	53.015
SRR1811619	moderate drought stress	52.890

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	123.133
DRR006520	Root Summer glycyrrhizin high producing strain	131.979
DRR006521	Root Winter glycyrrhizin high producing strain	64.261
DRR006522	Root Winter glycyrrhizin high producing strain	67.610
DRR006523	Root Summer glycyrrhizin low producing strain	80.366
DRR006524	Root Summer glycyrrhizin low producing strain	79.613
DRR006525	Leaf Summer glycyrrhizin high producing strain	32.734
DRR006526	Leaf Summer glycyrrhizin high producing strain	34.462

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	184.833
SRR2868004	Drought Stress (root)	104.904
SRR2967015	Control (root)	89.345

SRA Experiment	Description	TPM
SRR9715738	Leaf	49.244
SRR9715740	Leaf	54.206
SRR9715741	Leaf	38.738
SRR9715739	Root	50.979
SRR9715742	Root	55.384
SRR9715743	Root	59.355

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	193.143
SRR8749028	MeJA induced 9h	89.649
SRR8749029	MeJA induced 9h	111.413
SRR8749030	Uninduced	32.794
SRR8749031	Uninduced	12.586
SRR8749032	Uninduced	25.238

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	118.433
SRR8400027	Control - Root	102.762