Gene detail information of Glyur001984s00039990 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G45332.1 | 1.00E-37 | Translation elongation factor EFG/EF2 protein |
| NR | KDO85621.1 | 2.28E-44 | hypothetical protein CISIN_1g004311mg [Citrus sinensis] |
| COG | YP_003265079.1 | 2.00E-26 | translation elongation factor G [Haliangium ochraceum DSM 14365] |
| Swissprot | tr|Q9C641|EFGM1_ARATH | 4.00E-43 | Elongation factor G-1, mitochondrial (Precursor) |
| trEMBL | tr|A0A067HCU4|A0A067HCU4_CITSI | 9.00E-45 | Elongation factor G, mitochondrial {ECO:0000256|HAMAP-Rule:MF_03061} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01984 | 15291 | 17884 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001984s00039990.1 | PF03144.20 | GTP_EFTU_D2 | 24 | 77 | 6.40E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.516 |
| SRR1783600 | control | 3.029 |
| SRR1783602 | moderate drought stress | 2.591 |
| SRR1811619 | moderate drought stress | 1.748 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.109 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.887 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 9.018 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 7.663 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.038 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.022 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.946 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.296 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 8.285 |
| SRR2868004 | Drought Stress (root) | 9.744 |
| SRR2967015 | Control (root) | 8.594 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 12.104 |
| SRR9715740 | Leaf | 11.764 |
| SRR9715741 | Leaf | 9.494 |
| SRR9715739 | Root | 2.410 |
| SRR9715742 | Root | 7.690 |
| SRR9715743 | Root | 6.561 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 20.449 |
| SRR8749028 | MeJA induced 9h | 14.460 |
| SRR8749029 | MeJA induced 9h | 28.075 |
| SRR8749030 | Uninduced | 30.551 |
| SRR8749031 | Uninduced | 48.836 |
| SRR8749032 | Uninduced | 40.954 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 9.844 |
| SRR8400027 | Control - Root | 11.348 |