Gene detail information of Glyur001982s00031846 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G16190.1 | 5.00E-16 | Isochorismatase family protein |
| NR | KHN47837.1 | 1.53E-69 | hypothetical protein glysoja_029255 [Glycine soja] |
| COG | YP_005472486.1 | 6.00E-12 | putative hydrolase [Caldisericum exile AZM16c01] |
| Swissprot | tr|Q93Z51|NIC4_ARATH | 1.00E-34 | Probable inactive nicotinamidase At3g16190 {ECO:0000305} |
| trEMBL | tr|K7L7T7|K7L7T7_SOYBN | 2.00E-69 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G21781.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01982 | 48170 | 50650 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001982s00031846.1 | PF00857.15 | Isochorismatase | 78 | 130 | 4.20E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.210 |
| SRR1783600 | control | 2.689 |
| SRR1783602 | moderate drought stress | 2.349 |
| SRR1811619 | moderate drought stress | 2.483 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.626 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.329 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.005 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.356 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.745 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.615 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 9.280 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 8.887 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.040 |
| SRR2868004 | Drought Stress (root) | 5.099 |
| SRR2967015 | Control (root) | 3.093 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 7.566 |
| SRR9715740 | Leaf | 10.643 |
| SRR9715741 | Leaf | 8.127 |
| SRR9715739 | Root | 0.799 |
| SRR9715742 | Root | 2.774 |
| SRR9715743 | Root | 2.601 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.444 |
| SRR8749028 | MeJA induced 9h | 1.184 |
| SRR8749029 | MeJA induced 9h | 1.216 |
| SRR8749030 | Uninduced | 1.162 |
| SRR8749031 | Uninduced | 0.774 |
| SRR8749032 | Uninduced | 1.093 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.128 |
| SRR8400027 | Control - Root | 2.863 |