Gene detail

Gene detail information of Glyur001982s00031838

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G16170.1	2.00E-173	AMP-dependent synthetase and ligase family protein
NR	XP_004506833.1	0	PREDICTED: malonate--CoA ligase-like isoform X2 [Cicer arietinum]
COG	YP_004655716.1	1.00E-88	long-chain-fatty-acid--CoA ligase [Runella slithyformis DSM 19594]
Swissprot	tr\|Q8H151\|AAE13_ARATH	0	Malonate--CoA ligase
trEMBL	tr\|I1KGM8\|I1KGM8_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA07G02180.2}

Sequence

Transcript Sequence

>Glyur001982s00031838.1
CAATCAATCACGTTCCCCTCGAGTTTCCTGACACATATTAAGGAAGAGGGAACCACAGCAACAGAGAGGCATTGAATGAGTTCCATTCCAAAGCGCCACCAGAGAAAACGCCCCACCACGTTTGACTGAAGAAACCAGACAAACGGCCAAAGCCAAAAAGGCCAACGACAAACGTAGTGCAAAATAACGCACGCTCCCACCTAACTCTACCGCTGAGACACAGACACATCATTTAGTTATTAAGAGGAGAGTTTGGAACCATTTTGGCCACCTAAATGAGCAACTCATTTAAGTCTTTCAACAAACACCTCACTCTCCTCTCTCTTTACAAACACAAACACAGCTTTTCCTCCTCTTCTTCTTATTATGGTTTCGTAGCTTCTTCCTCTTCTCTCAATCTCTTCCCTCACCACCCCAGGTTGCGTTTCTCTCTGTTTCGCCCATACTCTTCATCTCCACCTGCTACGTTTATGGAGGTCTTCAAAGCAATTGCCAATAAAGAACATGCAGCTCGTGGCAATGTTGCTATCAGAGCTGATCAGAAGATTTATAGTTACATGCAACTCATCTCAGCGGCACGGAAGATATCTAATCTCTTGTGTGGAAGTGATGTGAAAGTTGGAAATCTTGGTGGAGCTCGAATAGGAATCGTAGCCAAACCCTCTGCTGAATTTGTTGCTGGAATACTTGGGACATGGTTTAGTGGAGGTGTTGCTGTTCCACTTGCACTCAGCTATCCAGAAGTAGAGCTCTTGCATGTGATTAATAATTCGGACGTGTCTGCAATACTGAGTACTGAAGATCATAGTGAATTAATGCAAAGCATTGCCAATAAAACCTCTTCTCAGTTTTTTCATCTTCCACCTGTTCCCAATAAGTCACATTCACAGAATGGGGAAATTGATGCAGACAGAAGTTTCCTGGAGAATATTGAAAGATCAATTCTTTCTCATCGTTTGGTTTTCATATCCTCTGGCTTAGGTGAAGATCCAGCACTGATTTTGTACACTAGTGGGACAACAGGTAAACCTAAGGGAGTTGTCCATACACACAGAAGCATCATTTCCCAGGTTGAGTTTTTGCCAAAATTTAGCGTCAGGGGAATTTGGCAGAGATGGCGTGAGTCATATCCAACTGAAGGGTCTAAGGCTGATGATGCTATAACTGTGTTCACTGGAATCTATGATATGATGGTTCATTCTCACAGCACCTTGGTTCCTACTATGTACACCCGATTAATACAAGGTTATCATGCGATGGATCCTGAGCTACAAGCCGTTTCAGCATCTGCCGCAAGGAACTTGCGTCTTATGATGTGTGGGTCCTCTGCACTCCCTCAACCTGTTATGCAAGAATGGGAAGCCATCACTGGGCACCGCTTATTGGAGCGATATGGCATGACTGAATTTGTCATGGCATTGTCAAATCCATTGAATGGTGAGCGTAAGGCAGGGACCGTTGGCAAACCATTTCCTGGTGTGCAGGTCAAGATTCTTGCAGACGAGGAGGGTGAGAGTGAAAAAACTGGATCTGGCGAGCTTTGCATTAAAAGCCCTTCATTGTTTAAAGAATATTATAAACTTCCCCAGAGGGTCGTGAGGATAAAGCTGAATGTTTATTGGAAGGGTGTAGAGGATCGTGGGAGAGAGATAATTTTTGGGGTAAAGTTGGTGGCTATTGGCCTTGACGATGGATTCTTTAAGACCGGAGATGCAGTTACTACAGATAAAGATGGATATTACATCATTCTAGGACGTACTAATGCTGATATAATCAAGGTCGGTGGCTATAAGCTGTCTGCATTAGAAATTGAATCGGTTATAATAGAGGCAACGGTCTCAGAATGTTGTGTTTTGGGCTTACCAGACAAAGATTATGGAGAAATTGTTGGCGCAATTATCGTGCCAGAGGTTGATGCTAAGCGAAAGCGAGATGAAGAATCAAAGCCTGTTCTAAGCCTAGAAGAATTGTCCACCTGGGCCAAAGATAAAATTGCGCCTTACAAGATACCAACTCGACTAATCTTGTGGGACTCACTCCCTCGCAATGCAATGGGGAAGGTAAATAAAAAAGAGCTGAAGAAGCTGCTGGCTTCAGATCAGTGAATTCCATTATTTGCTGGGCAAAGTCAATTTTCTGAAACCAATTCTAAGACGGTGCCAATCTCAAATAAAATTGCAGTAATTATTCACATGAAAGAGGAGCCTTTATTCTGGCTTTTCTCATGACAATTAAGTTTTAGCTTATCTCTAGGAAGAAAAAAAAAAGGCAAAAAATATAACTAACATTTTAAATTGACGAGGGTGATTGAGTGTAATGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01982	3882	12994	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K18660	ACSF3	EC:6.2.1.-	Valine, leucine and isoleucine degradation	map00280

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function
GO:0003824 catalytic activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001982s00031838.1	PF00501.23	AMP-binding	80	502	2.30E-63
Glyur001982s00031838.1	PF13193.1	AMP-binding_C	511	595	8.90E-11

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	12.350
SRR1783600	control	12.640
SRR1783602	moderate drought stress	12.832
SRR1811619	moderate drought stress	12.849

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.775
DRR006520	Root Summer glycyrrhizin high producing strain	9.464
DRR006521	Root Winter glycyrrhizin high producing strain	57.908
DRR006522	Root Winter glycyrrhizin high producing strain	56.769
DRR006523	Root Summer glycyrrhizin low producing strain	11.862
DRR006524	Root Summer glycyrrhizin low producing strain	11.868
DRR006525	Leaf Summer glycyrrhizin high producing strain	9.082
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.733

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	54.644
SRR2868004	Drought Stress (root)	57.698
SRR2967015	Control (root)	72.282

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	27.361
SRR9715740	Leaf	12.367
SRR9715741	Leaf	24.508
SRR9715739	Root	9.377
SRR9715742	Root	25.764
SRR9715743	Root	22.714

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	28.112
SRR8749028	MeJA induced 9h	66.806
SRR8749029	MeJA induced 9h	40.991
SRR8749030	Uninduced	167.556
SRR8749031	Uninduced	225.879
SRR8749032	Uninduced	112.635

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	45.634
SRR8400027	Control - Root	39.495