Gene detail

Gene detail information of Glyur001981s00035953

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G26680.3	8.00E-156	DNA repair metallo-beta-lactamase family protein
NR	XP_004493109.1	0	PREDICTED: DNA cross-link repair protein SNM1-like isoform X1 [Cicer arietinum]
COG	YP_004781191.1	3.00E-09	hypothetical protein Pyrfu_1071 [Pyrolobus fumarii 1A]
Swissprot	tr\|Q38961\|SNM1_ARATH	0	DNA cross-link repair protein SNM1
trEMBL	tr\|I1ML74\|I1ML74_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA16G05020.2}

Sequence

Transcript Sequence

>Glyur001981s00035953.1
ATGTCGCTATCCACCACCGCCTCACCACCACCGGAGTTAGAAGAAGGATTGTTACCTCACGACGGTGACGGTTACGACGCTAACGACGACGACGGCGCGTCGTTCGACGTCGTTTCACTGGACGAGGAGGGTTTCCCGTCACAAGTCCCCGTCGAAGACGGTTCACCGAACGGATCTGAGAAAAGCAGTTTCGCCGCCGATTTCTATAACTGCGGAACCAATTTTTCGTCGCTGTTGTCGTTGCCAGAAGATAACGGACACAGGGATTCGATACCTTCGGGGAAGAAGCTGAAGCAGGCCAATCTGTTCCAGATTTGGGGCTTCAAAAGAAACGACACCGTTAGTTCCGTTGAATCTGAACCCAATCAAGGTGGTTATCGTGACGATGGAGGTGACGGAAGTGTTTTTTCTGAGAGGAAGATTGTGAAACCTGGAAATAGGGGTTCGATTTCGCGTGACAAAGGGAAAGTGTTTGAGAACTCAAATTCTTCTCGCAAGAGAAACAATTCCCATGGAGAAGAAAATAGGGTTCCACGTACTTGTCCCTTTTATAAGAAATTGCCAGGAACAACCTTCACAGTTGATGCTTTTCGTTATGGGTCTGTTGAGGGGTGCTCAGCGTACTTTCTCAGTCATTTCCATGCCGATCACTATGGTGGCCTTAGCAAGAAATGGTCACATGGCCCTATTTATTGCTCTCCTCTCACGGGAAAACTACTTCAAACGTGTCTCTCGGTAAATCCTTTGTACATCTACCCTTTGGAGTTTAACTATGGACATGTGATTGATGGTGTCAAAGTGACTTTGTTAGAAGCTAATCATTGCCCTGGTGCAGCTTTGATTCACTTTGACCTCCCAAATGGGCAATGTTATTTGCACACTGGGGACTTTAGAGCTATTAAACCAATGCAAGCTTACCATCTTCTTGTAAACAAACGTGTGAATGTACTATATTTGGATACCACATATTGCAACCCAAAGTACAAGTTCCCTTCCAAGGAAGATGTACTCGACTATGTTGTCAAAATTACGAAAAACCACCTCAAAATGCATCCCAGAACTTTAGTGGTTGTTGGGGCCTACAGTATTGGCAAAGAGTGTGTATATCTTAATATTTCTAAGGCACTCGGGGTAAAAATCTACTCAAATGCTTCAAGAAGACGGATTTTGCTAGCTTTTNACTGGCCTGATCTTTCTGATAGACTCTGTACAAATGGAAACAACACCCTTCTCCATATTCTGCCCATGTCATCTCTGAGAATTGAGACCTTGAAGGATTACTTNAAGACCTACAAGGAACAATTCACAGCAATATTAGCATTTCGTCCAACGGGTTGGACCTTCAGTGAGAAGATAGGCAACCATCTGGAACTAATTAAACCTGTTTCCAGAGGAAATATCACGATATATGGGGTTCTCTACAGTGAGCACTCCAGTTTCATAGAACTGCGAGATTTTGTTCAGTTTTTGAAGCCTGACAAGATTATTCCTACTGTGAATGTCGGGAATGCTGCTAATCGAGAAAAGATGCAATCTTACTTCCGAGACTGGTTGAGGCCTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01981	27840	31102	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001981s00035953.1	PF12706.2	Lactamase_B_2	205	330	3.10E-08
Glyur001981s00035953.1	PF07522.9	DRMBL	397	503	1.10E-34

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.371
SRR1783600	control	3.373
SRR1783602	moderate drought stress	2.749
SRR1811619	moderate drought stress	2.797

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.643
DRR006520	Root Summer glycyrrhizin high producing strain	1.589
DRR006521	Root Winter glycyrrhizin high producing strain	1.682
DRR006522	Root Winter glycyrrhizin high producing strain	1.593
DRR006523	Root Summer glycyrrhizin low producing strain	0.334
DRR006524	Root Summer glycyrrhizin low producing strain	0.274
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.946
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.974

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.745
SRR2868004	Drought Stress (root)	4.730
SRR2967015	Control (root)	3.179

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.736
SRR9715740	Leaf	1.530
SRR9715741	Leaf	0.918
SRR9715739	Root	1.347
SRR9715742	Root	1.615
SRR9715743	Root	1.601

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.827
SRR8749028	MeJA induced 9h	4.686
SRR8749029	MeJA induced 9h	2.156
SRR8749030	Uninduced	1.958
SRR8749031	Uninduced	1.169
SRR8749032	Uninduced	0.865

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.044
SRR8400027	Control - Root	5.814