Gene detail

Gene detail information of Glyur001979s00036876

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G12930.1	2.00E-129	ARM repeat superfamily protein
NR	XP_007161777.1	0	hypothetical protein PHAVU_001G0976001g, partial [Phaseolus vulgaris]
trEMBL	tr\|V7CXZ9\|V7CXZ9_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW33771.1} (Fragment)

Sequence

Transcript Sequence

>Glyur001979s00036876.1
TGGCGGTAAGGTGGGTCGCATCGTAGAGGAGCAGAGCCAAACCCTCGCCTCTCACTGGTGTGTCATTTGTTCATAGCCCATAGCCGTCCGATGAATGGGGAACAACAACGGTTAACAGAATCAGTTGCAGTTGTTGTTCCAGGCGTCGCTCCCTCCCACCTTCCTTCCAATTCCACCATTCATCATCATCATCACCATCACCATCACCATCACCATCATTATTCTCTTCCATCTGTTCCTCTCTCTTTTTTCCCCCAATTTCATTTTTCTAAATTAATAATTCTTACTATTTTTTTTTTAACCCAAAAAAGAAAAGAAAAAGTAGAATAGGACATGGAATTGGCATTGAAGGTGGCCGAGGCTGTTCATGTGCTGAACCACGATACCCAATCCTGCAACCGCGTCGCAGCCAATCAGTGGCTCGTTCAGTTCCAACAAANCCACGCCGCCTGGGACGTCGCCACCGCCATCCTCACCTCCGATCGCCACCACCCACTCGCCTCTAATTTTGAGGTCGAGTTCTTCGCCGCTCAGATTCTCAAACGCAAGATACAAAATGAAGGTTATCTACTGCAATTAGGAGCTAAGGATGCTTTGTTAAATGCCCTTCTTCTTGCTGTCAAAAGATTCAGTAGTGGTCCGCCCCAGCTTTTAACACAGATCTGTCTTGCACTCTCTGCTCTNGTACTTCAAGTTGTTGCACATGGAAACCCGATTGAGCAGCTCTTTTACAGTCTCCGGAATCTGCAGACGCAAGATGATGGCAATGTTGCTGTCCTGGAGATGCTCACTGTCCTGCCAGAGGAAGTTGTTGACAACCAACGTATTGATTCTAAAATTAATTCGTTACACAAAAGCCACTATACCCAAGAGCTTCTCTCTCATACACCTATGGTTCTCGAGTTCTTGCTGCAGCAATCTGAAATAAATTTTGATGGTTCTGTGCAACAGAATGAAAGGAACAGGAAAATTTTGCGCTGCTTATTGAGCTGGGTTAGAGCAGGTTGCTTCTCNGAGATTTCTCCGGGAATGTTGCCAGCTCACCCACTTCTAAATTTTATATTCAACTCATTGCAGGTTTCTTCATTATTCGATCTGGCCATTGAAGTTCTTGTTGAACTTGTGACTAAACATGAGGGAGTGCCCCAAATTTTGTTATGCAGAGTACATTATCTGAAGGAAGTACTTCTTTTTCCAGCTCTTAATAGGGGAGACATGAAAGTAATTGGTGGCCTTGCATGCTTGTTGTCAGAAATTGGGCAGGCTGCTCCATCTCTAATTGTAGAAGCAAGTGCAGAAGCCCTTGCACTGGCAGATGCCCTCTTGAGCTGCGTGGCATTTCCAAGTGAAGATTGGGAGATTGCAGACTCAACACTGCAGTCCACTCTTGCAAGCTATATACTTGGCATTGATGAAGATGGTGCGAAAAGTAGAAAACACGTGGAAGACATTTTTTCACCTGTGTTCTTAGCATTACTTGATTCACTGTTATTACGTTCTCAGGTGGATGATTCTACATACAACGATGAAAGAAGAGTGATTGATTTGCCCGATGGCCTTATCCATTTCAGAATGAATCTAGTAGAACTTTTGGTGGATATATGTCACCTGTTAGGATCTTCAATATTTATGCAAAAGCTCTTTATAGGTGGGTGGGCATCTCCGAATCTATCAATCCCTTGGAAGGAAGTGGAAAGCAAGCTATTTGCTCTTAATGCTGTGAGTACCACTTGCAGCTTTCACGTCGCAAGGAATCTTCCGTGTCTAGGTCTGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01979	40722	51364	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005488 binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001979s00036876.1	PF08389.7	Xpo1	103	260	4.50E-20

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.924
SRR1783600	control	6.998
SRR1783602	moderate drought stress	7.777
SRR1811619	moderate drought stress	7.775

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.385
DRR006520	Root Summer glycyrrhizin high producing strain	4.387
DRR006521	Root Winter glycyrrhizin high producing strain	4.424
DRR006522	Root Winter glycyrrhizin high producing strain	4.213
DRR006523	Root Summer glycyrrhizin low producing strain	4.635
DRR006524	Root Summer glycyrrhizin low producing strain	4.661
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.377
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.460

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	11.391
SRR2868004	Drought Stress (root)	14.516
SRR2967015	Control (root)	14.885

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.424
SRR9715740	Leaf	3.346
SRR9715741	Leaf	5.454
SRR9715739	Root	2.618
SRR9715742	Root	10.922
SRR9715743	Root	6.974

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.090
SRR8749028	MeJA induced 9h	12.831
SRR8749029	MeJA induced 9h	1.356
SRR8749030	Uninduced	2.629
SRR8749031	Uninduced	4.836
SRR8749032	Uninduced	2.136

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	12.898
SRR8400027	Control - Root	12.450