Gene detail

Gene detail information of Glyur001978s00029866

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G45616.1	8.00E-121	receptor like protein 6
NR	KHN20336.1	0	Receptor-like protein 12 [Glycine soja]
COG	YP_004775215.1	5.00E-31	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|Q9C9H7\|RLP12_ARATH	7.00E-99	Receptor-like protein 12 (Precursor)
trEMBL	tr\|K7MTM2\|K7MTM2_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA18G43510.2}

Sequence

Transcript Sequence

>Glyur001978s00029866.1
ATGAGAATTCTATATGTTCCATGGCTTTCCATCATATTCTGCTACTGCTGCTGGGTATACCTTAGTGTTGACATCACTGTGGTCACTGGCCAAATTGTTGAGGAACAACAATCATTGCTGAAACTGAAGAACAGACTCCAATTCAAGTATGAAAATTCTGCAAAGCTTGTAACCTGGAATCCAAACATTGAGTGCTCTGAGTGGANTGGTGTAACCTGTGATGAAGAGGGACATGTTATTGGTCTTGATCTGAGTGGAGAATCAATCTATGGTGGATTTGACAATTCAAGTAGTCTTTTCAGTCTCAAAAATCTCCAGAGTTTGAACTTGGCTTCTAATAACTTCAATTCTGTTATTCCATCTGGATTCAACAAGCTGAAGAACTTATCTCATCTGAATTTGTCATATGCTGGCTTTGTGGGACAGATTCCAANAGAGATTTCTCACTTGACAAGGTTGGTTACTCTTGATCTCTCTTCTCATTCCTATTTAAATGGTCAACCAGTGAAACTTGAGAACCTAGACCTACAAAAGCTTGTCCAAAACCTCACCAGGATTAGGCAACTGTATCTGGATGGTGTAAGTGTNACAGCAGAGGGACATGAATGGTGCAATGCTTTATTGCAACTGCCTCACCTGCAGGAACTNAGCATGTCAAACTGCAATCTCTCGGGACCCCTTGATCCTTCCCTGGCAATACTTGAGAATCTCTCAGTCATTCGTCTTGATCAGAACAACTTATCATCCATAGTGCCTGAAACCTTTGCTGATTTTTCAAACCTGACAACCCTGCACCTTAGTTCTTGTGGATTGACTGGAGTATTTCCAGAGNAGATCTTTCAGGTTGCAACTTTGTCTGTTATAGACATATCCTCCAATGAGAATCTTAATGGTTCTTTGCCAGAATTCCCATTGCATGGATCTCTTCAGAACTTGATTGTAAGTAACACTGGTTACTCAGGAGCACTACCAGTTTCAATAAGTAATCTGCAGAAACTGTCCATCTTAGATCTTTCTAATTGCCAGTTTAACAGTACACTTCCCAGTTCAATGTCAAGACTCAGGGAACTCACTTATCTAAACTTGCAATTTAACTACTTCAGTGGTCCAATTCAATCCTTGAATACGTCCAAGAATCTCACCCATTTAGACCTCTCCCACAATTATTTTACAGGTCCAATTACGTCTGTTCACTTGGAAGGCCTAAGAAAACTGGTCCAAATTGATTTGCAGAACAACTTCCTCAATGGAAGCATTACTTCTCTTTTTGCACTCCCATTGCTACAAAGTATTCAACTTTCCAACAACAGTTTTCAAGGTCAGCTGGATGAGTTCTCAAATGTCTCTTCCTCCAATTTAGAGGTCATTGATTTAAGCAGTAACAGTTTAGAAGGGACCATTCCTACATCTATTTTTCATCTCAGATCACTTGGAGTCCTCCAACTGTCTTCAAACAAGTTAAATGGCACATTAAAGCTAGCTGTGATTAAGAGACCTGCAAATCTGACTACACTAGATCTTTCACACAACAACTTGTCAATAGATGCAAATATTACAGATGTACATGTATCTACCTTCCCCAAGATGCTCACTGTAAAGCTCGCTTCTTGCAATTTGAAAGAATTCCCTGGTTTCTTGAGAAACCAATCCAGATTAAACTCTTTAGACCTCTCAAGAAACCATATTCAAGGATCTATACCCACATGGATTTGGCAACTTGACTCCCTTACTCAATTAAATCTTTCACACAATTTGTTCCTCAAGTTAGAAAGACCTATACAAAATCCTAGTCCCAAATTGAATGTCCTTGACCTTCACTCTAACCAACTCCAAGGCCAGCTTCCAATATTCCCTTTACATCTCACTTATTTGGACTATTCAAGCAATAACTTCAGTTCCACTATTCCATCAGATATCGGTGCTCGCCTGGCTTTCATTATTTTTCTGTCTCTTTCCAAAAATAATTTATCTGGGAGTATTCCTCAATCCTTGTGCAATAATTCAAATCTGTTGGTTCTTGATGTCTCATATAATCACTTCGAAGGGACTATTCCAGAGTGCTTAACAATGAGTGAGACACTTGTGGTATTAAATATGCAACATAACATGCTCCATGGCAATATTCCTGGTACATTTACAGAATCTTGTGCTCTAAGAACTCTAGATCTCAATGGGAATCAATTAGGGGGTCCAATCCCCATCTCTCTTATGAATTGCCCATCATTAGAGGTATTAGATCTTGGAAACAATCAGATCAATGATAGTTTTCCATGTTTCTTAAAGAACTTATCCAGACTCCGTGTCATGGTTTTGCGGGAAAACAAATTCCACGGTCGCATTGGATGTCCTGAGACCGGCGGTACTTGGCATATGCTTCAAATTGTTGATCTGGCTTTCAACAGTTTTAGTGGTTCACTTCCAGCAAAATGCATCAAAACCTGGGAGGCAATGATGCTTGATGAAGATTACCATGCATCAAAGTTCAATCACATTGAATCACGGATCCTTCAATTTGGTCATATATATTATCAAGATTCAGTAACACTCACCAGCAAAGGTTTACAGATGGAGTTTGTTAAAATCCTAACTGTCTTCACTTCTGTTGATTTCTCATCCAACAATTTCCAAGGGCCAATACCAGAAGAGCTGATGAATTTCACAGGACTTCGTGTTCTCAACTTGTCACATAACGCTTTGACCGGCCCAATCCCATCGTCTATAGGGAATCTAAAACTGCTTGAGTCATTGGACCTGTCAAGCAACAATTTTGATGGGAAAATTCCTACACAGCTTGCAAGTTTAAACTTCCTCTCATACATGAACCTTACCTTCAATCATCTTGTGGGGAAGATACCTATAGGGGCACAGTTTCAAACATTTGATGCCTCTTCCTTTTCTGGGAATGAAGAATTATGTGGAACTCCTTTGGTTAAAAACTGTAGTGATCATCAGAGCAAGTCAACAGAGGAAGTACATACAGATTCAGGACTTGAATTTGACTGGATTTCTGTATCATTTGGAGTGGGATTTGGGGTTGGAGCAGGATTGGTTGTTGCCCCATGTATGTTTTGGGAGAAGGGGAGAAAATGGGGCAACCATAAAATTGATAAATTTCTCCTAGTCATTCTTCCAATGGTTGGTTTGATTTATACACCCATTGCTGATGATGAGACAGAAAAAGATACTGAAGAAAATAACTCAGATATGGAAGAGAAGAGTGACCGCAAAGAAGAACATGATGATTTGGGTTATCAATATCATAGGTTTCAAGGGAAGTATTGTGTTTTCTGTTCCAAGCTTGATATCAGTAAGAAAAAGGTCATTCATGACCCAAGGTGTACATGTCACAACTCACCAACCGTTTCAACAGCTACTTATTCAGAGTCCTATTCTTCTTAG

Protein Sequence

>Glyur001978s00029866.1
MRILYVPWLSIIFCYCCWVYLSVDITVVTGQIVEEQQSLLKLKNRLQFKYENSAKLVTWNPNIECSEWXGVTCDEEGHVIGLDLSGESIYGGFDNSSSLFSLKNLQSLNLASNNFNSVIPSGFNKLKNLSHLNLSYAGFVGQIPXEISHLTRLVTLDLSSHSYLNGQPVKLENLDLQKLVQNLTRIRQLYLDGVSVTAEGHEWCNALLQLPHLQELSMSNCNLSGPLDPSLAILENLSVIRLDQNNLSSIVPETFADFSNLTTLHLSSCGLTGVFPEXIFQVATLSVIDISSNENLNGSLPEFPLHGSLQNLIVSNTGYSGALPVSISNLQKLSILDLSNCQFNSTLPSSMSRLRELTYLNLQFNYFSGPIQSLNTSKNLTHLDLSHNYFTGPITSVHLEGLRKLVQIDLQNNFLNGSITSLFALPLLQSIQLSNNSFQGQLDEFSNVSSSNLEVIDLSSNSLEGTIPTSIFHLRSLGVLQLSSNKLNGTLKLAVIKRPANLTTLDLSHNNLSIDANITDVHVSTFPKMLTVKLASCNLKEFPGFLRNQSRLNSLDLSRNHIQGSIPTWIWQLDSLTQLNLSHNLFLKLERPIQNPSPKLNVLDLHSNQLQGQLPIFPLHLTYLDYSSNNFSSTIPSDIGARLAFIIFLSLSKNNLSGSIPQSLCNNSNLLVLDVSYNHFEGTIPECLTMSETLVVLNMQHNMLHGNIPGTFTESCALRTLDLNGNQLGGPIPISLMNCPSLEVLDLGNNQINDSFPCFLKNLSRLRVMVLRENKFHGRIGCPETGGTWHMLQIVDLAFNSFSGSLPAKCIKTWEAMMLDEDYHASKFNHIESRILQFGHIYYQDSVTLTSKGLQMEFVKILTVFTSVDFSSNNFQGPIPEELMNFTGLRVLNLSHNALTGPIPSSIGNLKLLESLDLSSNNFDGKIPTQLASLNFLSYMNLTFNHLVGKIPIGAQFQTFDASSFSGNEELCGTPLVKNCSDHQSKSTEEVHTDSGLEFDWISVSFGVGFGVGAGLVVAPCMFWEKGRKWGNHKIDKFLLVILPMVGLIYTPIADDETEKDTEENNSDMEEKSDRKEEHDDLGYQYHRFQGKYCVFCSKLDISKKKVIHDPRCTCHNSPTVSTATYSESYSS

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01978	1907	5305	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001978s00029866.1	PF08263.7	LRRNT_2	36	74	4.70E-05
Glyur001978s00029866.1	PF13855.1	LRR_8	97	136	5.00E-07
Glyur001978s00029866.1	PF13855.1	LRR_8	211	270	4.70E-08
Glyur001978s00029866.1	PF00560.28	LRR_1	332	353	0.5
Glyur001978s00029866.1	PF00560.28	LRR_1	379	401	0.22
Glyur001978s00029866.1	PF13855.1	LRR_8	451	512	4.60E-08
Glyur001978s00029866.1	PF13855.1	LRR_8	531	585	1.20E-08
Glyur001978s00029866.1	PF13855.1	LRR_8	718	775	7.00E-08
Glyur001978s00029866.1	PF00560.28	LRR_1	889	910	0.044
Glyur001978s00029866.1	PF00560.28	LRR_1	913	933	0.89

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.224
SRR1783600	control	1.201
SRR1783602	moderate drought stress	1.047
SRR1811619	moderate drought stress	1.142

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.160
DRR006520	Root Summer glycyrrhizin high producing strain	0.152
DRR006521	Root Winter glycyrrhizin high producing strain	0.563
DRR006522	Root Winter glycyrrhizin high producing strain	0.448
DRR006523	Root Summer glycyrrhizin low producing strain	0.400
DRR006524	Root Summer glycyrrhizin low producing strain	0.357
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.718
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.693

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.724
SRR2868004	Drought Stress (root)	0.798
SRR2967015	Control (root)	0.711

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.390
SRR9715740	Leaf	1.501
SRR9715741	Leaf	1.967
SRR9715739	Root	0.120
SRR9715742	Root	0.672
SRR9715743	Root	0.413

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.822
SRR8749028	MeJA induced 9h	2.649
SRR8749029	MeJA induced 9h	1.614
SRR8749030	Uninduced	1.022
SRR8749031	Uninduced	6.362
SRR8749032	Uninduced	4.894

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.543
SRR8400027	Control - Root	0.699