Gene detail information of Glyur001977s00043011 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G38120.1 | 3.00E-48 | Transmembrane amino acid transporter family protein |
| NR | XP_004171931.1 | 1.40E-66 | PREDICTED: auxin transporter-like protein 2-like [Cucumis sativus] |
| Swissprot | tr|Q8L884|LAX4_MEDTR | 6.00E-67 | Auxin transporter-like protein 4 |
| trEMBL | tr|V7ANX2|V7ANX2_PHAVU | 4.00E-69 | Uncharacterized protein {ECO:0000313|EMBL:ESW05916.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01977 | 25494 | 36145 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001977s00043011.1 | PF01490.13 | Aa_trans | 59 | 158 | 3.10E-16 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.995 |
| SRR1783600 | control | 3.724 |
| SRR1783602 | moderate drought stress | 7.526 |
| SRR1811619 | moderate drought stress | 6.718 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 12.349 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 12.074 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.301 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.057 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 9.480 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 9.132 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.316 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.790 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 57.705 |
| SRR2868004 | Drought Stress (root) | 50.311 |
| SRR2967015 | Control (root) | 53.049 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 19.984 |
| SRR9715740 | Leaf | 13.014 |
| SRR9715741 | Leaf | 19.198 |
| SRR9715739 | Root | 5.448 |
| SRR9715742 | Root | 36.048 |
| SRR9715743 | Root | 24.866 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 18.762 |
| SRR8749028 | MeJA induced 9h | 14.381 |
| SRR8749029 | MeJA induced 9h | 9.118 |
| SRR8749030 | Uninduced | 0.556 |
| SRR8749031 | Uninduced | 0.560 |
| SRR8749032 | Uninduced | 0.362 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 39.843 |
| SRR8400027 | Control - Root | 43.270 |