Gene detail

Gene detail information of Glyur001976s00037557

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G03420.1	1.00E-65	Ku70-binding family protein
NR	XP_004516870.1	2.90E-95	PREDICTED: mitochondrial inner membrane protease ATP23-like isoform X1 [Cicer arietinum]
trEMBL	tr\|A0A059APL6\|A0A059APL6_EUCGR	4.00E-88	Uncharacterized protein {ECO:0000313\|EMBL:KCW55907.1}

Sequence

Transcript Sequence

>Glyur001976s00037557.1
GTGTAAATTCTCATCCAAAGACTTAGATTCCTACTTACTCTCTGGAGCAATCCAGACCCTTGGATCAATATCACTCAACCCTAACTCACTCCCCCTAAACTTCACTAGCTTTCCCTCACTCTATTTTCACTTTCTTTGTTCTCCTCATCTCTCTTTGTTTCTTATTCTCTCCACCATCCACCGTGGCGTGAACCACCATNGCACACCACCGGTCTGCCACCACCATCCGCCGTATTCGCGTCGGAGTCACGAAACACCGCGGAACCAAGGACGGTCTTTAGCAAGTGGAAGTCAAAGGATCTTGGAAGGAACCTTCAACAAGGCATTTAAGGGTGTTACAGAATCCGAATTCTGAAACCAACAAGCGCTGAACTGAATGGCACAGAGTCACACTTCCTCTGCAGCAGCTTTGAAGGAGTTGAAGGAGTGCGAACGCAAGATTCAAAAGAGTCTCAAGTCTCCAACGGTGAGGTTCTTGAGGGAACAATTCGAGAAAGCTGGGTGTCCCATCGGAGACAATTTCATCAAAGCTGCTCATTGCAATGAGGCACGGTATGCTGGTGGTTACATTCCTGGTCAGGGGATAGTTGTGTGCAGTGATGGGGTAAAACGTCAAGATGAGATTACCGGGGTGATAATTCATGAGCTAATTCATGCATTTGATCAGTGCCGTGCAGCAAACATGAATTGGAATAATTGTGCTCACCAGGCTTGTTCTGAGATAAGAGCTAATCGTCTAAGTGGTGATTGTCATTTCAAACGTGAACTTCTACGAGGATTTCTGAGGATACGAGGGCATGAACCAGAATGTATCAAAAGAAGAGTTATGAAATCATTGTCTGCAAATCCGTATTGCAGTGGTGCAAAAGGTGCCAAGGATTCTATGGAATCTGTATGGGATGTGTGTTATAATGATACAGAGCCTTTCGAGAAAGCTCCTTAAAAATCGCATGGTTGTTACTGGCATATAAAATACAGCCATTGGTTCCATTATTTGGCTAGGAGCTTTTTGGGGTGACCACACATCTGATTCAAATTGAAGAATGAAGACTTATTTATTCTGTTGCAAGTTGTAACTCCCATATGAAGATTTTTTTTTGTCTTTTCTTATCTTTTTTGGCTTGTGCCATATATTGAATTTAAATGTATTTTTGGACACTAAATCTACATTTTTCTTTATTAATTTAGCCTTGCATCAGAATTCAACTTTTGAGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01976	28442	34294	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0004222 metalloendopeptidase activity

GO:0008237 metallopeptidase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001976s00037557.1	PF09768.4	Peptidase_M76	16	185	1.20E-56

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.889
SRR1783600	control	6.922
SRR1783602	moderate drought stress	5.608
SRR1811619	moderate drought stress	5.789

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	13.722
DRR006520	Root Summer glycyrrhizin high producing strain	13.673
DRR006521	Root Winter glycyrrhizin high producing strain	17.537
DRR006522	Root Winter glycyrrhizin high producing strain	16.930
DRR006523	Root Summer glycyrrhizin low producing strain	15.206
DRR006524	Root Summer glycyrrhizin low producing strain	15.534
DRR006525	Leaf Summer glycyrrhizin high producing strain	12.520
DRR006526	Leaf Summer glycyrrhizin high producing strain	12.581

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	25.814
SRR2868004	Drought Stress (root)	23.148
SRR2967015	Control (root)	22.678

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	12.790
SRR9715740	Leaf	24.276
SRR9715741	Leaf	11.269
SRR9715739	Root	8.816
SRR9715742	Root	8.099
SRR9715743	Root	5.646

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	39.497
SRR8749028	MeJA induced 9h	34.866
SRR8749029	MeJA induced 9h	27.522
SRR8749030	Uninduced	8.050
SRR8749031	Uninduced	3.100
SRR8749032	Uninduced	6.040

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	22.679
SRR8400027	Control - Root	21.681