Gene detail

Gene detail information of Glyur001975s00035598.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G18610.2	5.00E-128	Protein kinase superfamily protein
NR	XP_003625560.1	0	Serine/threonine protein kinase PBS1 [Medicago truncatula]
COG	YP_003523895.1	5.00E-25	serine/threonine protein kinase [Sideroxydans lithotrophicus ES-1]
Swissprot	tr\|Q0WRY5\|CDL1_ARATH	1.00E-159	Serine/threonine-protein kinase CDL1 {ECO:0000305}
trEMBL	tr\|I1LYZ3\|I1LYZ3_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA13G19860.2}

Sequence

Transcript Sequence

>Glyur001975s00035598.1
CTCAGCCAATGNTGGTGTTTTTCCGACCAAAAAGAAACCAATGACGAAATTTCTGGCTTAAAAATTACCATGAAAATAAATAAAAAGTAAAAAAAAAAAAAGAACAAGCGTAGACCAACAATTCCGGAACACAACAACACAGTGACACACTCACACAGACAGAGGAACTGATGATGTTAAAACAACCTCAAGTGAGATAGAAAGAGGAAAAAAGGTGTCTCCTTTTCAAATGAATTTTGAGTGATCGGTGGATTCTTCAGCTACCATCTGGTTATGTGCTTGAAAAAAATCATGGGTTGGATTCCCTGTTCTGGAAGTTCAAACACCAAGAAGAAGAAGATGAAGAAGAAATTGGAGAAGATAGAATTGCAGCACATGGGTGATGCGATCCAATCCACCCCAGGGAAATTAAAGAGAAATTCATCTATGAATGCCAAGGATTCCTCTAAAAATGGAAACACTGATCACATTGCTGCACAAACATTCTCATTCCGTGAGTTGGCAAATGCTACTAGAAATTTTAGAGCAGAATGCCTTTTGGGTGAGGGAGGCTTTGGCAGAGTATACAAAGGGCATTTGGAAAATATTAATCAGATTGTTGCAATTAAACAACTTGATCGAAACGGGCTGCAAGGGAATAGAGAATTCCTTGTTGAAGTGTTGATGTTAAGTCTTCTTCACCACCCTAACCTTGTCAACCTGATGGGGTATTGTGCTGATGGAGATCAAAGGCTTCTAGTTTATGAATACATGTCACTAGGATCCTTGGAAGACCACTTACATGATATTTCTCCGAGCAAGATACGACTTGACTGGAACACAAGAATGAAAATAGCTGCTGGGGCAGCAAGGGGATTGGAATATCTACATGACAAAGCTAACCCTCCTGTCATATACCGAGATTTAAAGTGCTCCAACATTTTGCTTGGTGAAGGGTATCATCCAAAGTTATCTGATTTTGGTTTGGCTAAACTTGGCCCAGTGGGGGAAAACACCCACGTATCAACAAGGGTTATGGGAACCTATGGATATTGTGCTCCAGAGTATGCAATGACAGGCCAACTGACTCTGAAATCAGATGTTTATAGCTTTGGTGTAGTTCTTCTGGAAATAATTACTGGAAGGAAAGCGATTGACAATTCAAAATCTGCTGCAGAGCAGAATCTTGTTGCGTGGGTAAGACACACATACTGTTATCTCATCACATATTCATAAAGTAGCAAGTGTGGGTTAAATAATGGGAGGTAAGTATTGTCATATGAATTAGCTATGCTTGGAAAAATTTTACTTGCATGATTGTAATTGAGCTTGAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01975	31119	34769	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.2.2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001975s00035598.1	PF00069.20	Pkinase	88	300	7.30E-48

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	28.393
SRR1783600	control	28.437
SRR1783602	moderate drought stress	27.537
SRR1811619	moderate drought stress	27.509

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	23.745
DRR006520	Root Summer glycyrrhizin high producing strain	23.482
DRR006521	Root Winter glycyrrhizin high producing strain	9.508
DRR006522	Root Winter glycyrrhizin high producing strain	9.694
DRR006523	Root Summer glycyrrhizin low producing strain	23.079
DRR006524	Root Summer glycyrrhizin low producing strain	23.568
DRR006525	Leaf Summer glycyrrhizin high producing strain	10.530
DRR006526	Leaf Summer glycyrrhizin high producing strain	10.243

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	20.486
SRR2868004	Drought Stress (root)	23.706
SRR2967015	Control (root)	21.700

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	11.422
SRR9715740	Leaf	21.093
SRR9715741	Leaf	22.714
SRR9715739	Root	7.808
SRR9715742	Root	18.801
SRR9715743	Root	15.802

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.171
SRR8749028	MeJA induced 9h	12.396
SRR8749029	MeJA induced 9h	4.644
SRR8749030	Uninduced	2.828
SRR8749031	Uninduced	0.959
SRR8749032	Uninduced	1.140

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	35.612
SRR8400027	Control - Root	32.208