Gene detail

Gene detail information of Glyur001974s00028594

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G19490.1	1.00E-138	recA DNA recombination family protein
NR	KEH32505.1	0	DNA repair protein RecA, putative [Medicago truncatula]
COG	YP_391858.1	2.00E-134	recA protein [Thiomicrospira crunogena XCL-2]
Swissprot	tr\|Q9ZUP2\|RECA3_ARATH	0	DNA repair protein recA homolog 3, mitochondrial (Precursor)
trEMBL	tr\|A0A072V2Z1\|A0A072V2Z1_MEDTR	0	DNA repair protein RecA, putative {ECO:0000313\|EMBL:KEH32505.1}

Sequence

Transcript Sequence

>Glyur001974s00028594.1
ATGGCGAGGCTGCTTCGGAACACTTCCCTTTCTATGGCGAGGCTGCTTCGGAACACTTCCCTTCTCACACGCTCTCTATTCGTCGCTCAGTTTCCGATGTTGATAATGGGCCTTAAAATAGGAATATCCAGCACTTCTCAGATTTTGAGCTTTTCATCTAAAGGTAGAAGGCGCTCTAAATCGGATGTAAGTGACTCAGGTGAAGAGAACATGTCTAAGAAAGAGTTGGCCCTTCAACAAGCTCTTGATCAGATCACTTCTGCCTTTGGAAAAGGATCTATCATGTGGCTTGGTCGCTCTAACTCTCCAAAAGATGTACCTGTTGTGTCTACTGGTTCTTTTGCTCTTGATATAGCTCTAGGAGTTGGTGGACTTCCAAAGGGACGTGTTGTGGAAATATACGGTCCAGAGGCTTCTGGAAAAACAACTCTTGCTTTACATGTAATTGCGGAGGCACAAAAGCAAGGAGGCTATTGTGTATTCGTTGATGCTGAGCATGCCCTTGATAAGACACTTGCAGAGTCTATTGGTGTGAATACTGAGAACTTGCTTCTCTCACAACCAGATTGTGGTGAACAAGCACTTAGTCTTGTGGATACCTTAATCCGTAGTGGTTCAGTTGATGTAATTGTTGTAGACAGTGTGGCTGCTCTTGTTCCTAAAGGTGAGCTTGATGGTGAGATGGGTGATGCTCACATGGCAATGCAAGCTAGGTTGATGAGCCAGGCACTTCGAAAATTGAGCCACTCCTTGTCACTTTCTCAAAGTATATTGATTTTTATAAACCAGGTGAGGTCAAAGCTTTCTACCTTTGGGGGATTCAGTGGGCCNACTGAAGTTACTTGTGGTGGTAATGCATTGAAATTCTATGCTTCTGTACGGCTTAATATCAAGAGAATAGGGTTTGTCAAGAAGGGTGAAGAGGTTTTAGGAAGCCAGGTTCTTGTCAAGGTTGTGAAGAACAAGCTTGCCCCTCCATTCAAAACTGCCGAGTTTGAGCTTCAATTTGGCAAGGGTATATGTAGAGAAGCAGAGATTATTAAATTTAGCCTAAAACACAAACTCATCTCAAGGGCTGGTGCAATGTATTACTATAACGAACAGAATTTCCGCGGTGTGGATGCTCTCAAGAGTTTCCTAGCCGAAAATCACAGTGCATTAGAAGAACTTGAAATGAAGCTCAGGGAGAAGCTACTTAATGGCGAGACTGATAAGGTGCCAGAATCAGATGTGTTCAGTGGAGATGTTTCGGAAGAAATTACAACCCTTGATTCTACTGACGAAGAAGCCACAGTCGTTGCAGAAGCTTGACTTTGTGAGTGAACCTGAAATACGACTCACTATTTTCCCCGCCTCAATCTGGACCCCATGTAATTGATGAATTGGCCATAAAACGGTCCAGTCAAATGAAGGTCCTAACAAGGGACACATGCCTCAAATGCTTCTCATCATTGAATTTGGTTTCTCTAAAGTGAAGGGTGTGTTTTAAAAGGTAAAGTGTGGAATTAATGGGAAAATTAGTGATTGAGATTGTGGTTAAATTATATGCAGATATGTCAAAGTTAGTTGAAATCTATTCTGATTTTTCAATCAACAATTATAATTTTGTATTTTACCTTTTAAAGTGCACCCATCACTTTAGTAGAGTGAAGCCCCTTATAATTCTTGCTTGTGGTTAAATGTTTTTAAGTCACTGCTACTTGTAAATTAAATTTTTGGGTCATTTTGTGTAGCCCTGTGGCAGATGTAAGGTGACAGTGTAAAGGACTAACTGGTAAGGAAGCAAGGTTAGGTCACTCCAGAGTTGAGTCAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01974	23722	28838	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006259 DNA metabolic process

GO:0006281 DNA repair

GO:0009432 SOS response

molecular_function

GO:0003677 DNA binding

GO:0003697 single-stranded DNA binding

GO:0005524 ATP binding

GO:0008094 DNA-dependent ATPase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001974s00028594.1	PF00154.16	RecA	77	398	2.00E-135

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.677
SRR1783600	control	6.740
SRR1783602	moderate drought stress	8.677
SRR1811619	moderate drought stress	8.584

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	10.809
DRR006520	Root Summer glycyrrhizin high producing strain	10.503
DRR006521	Root Winter glycyrrhizin high producing strain	4.700
DRR006522	Root Winter glycyrrhizin high producing strain	4.798
DRR006523	Root Summer glycyrrhizin low producing strain	10.783
DRR006524	Root Summer glycyrrhizin low producing strain	10.320
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.774
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.680

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	10.452
SRR2868004	Drought Stress (root)	12.310
SRR2967015	Control (root)	12.255

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.377
SRR9715740	Leaf	9.635
SRR9715741	Leaf	10.209
SRR9715739	Root	4.747
SRR9715742	Root	9.099
SRR9715743	Root	9.717

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.363
SRR8749028	MeJA induced 9h	3.666
SRR8749029	MeJA induced 9h	3.228
SRR8749030	Uninduced	2.524
SRR8749031	Uninduced	0.659
SRR8749032	Uninduced	0.350

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	15.461
SRR8400027	Control - Root	14.141