Gene detail information of Glyur001973s00030840 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G38360.1 | 5.00E-41 | alpha/beta-Hydrolases superfamily protein |
| NR | AFK45210.1 | 1.40E-124 | unknown [Lotus japonicus] |
| COG | YP_005026939.1 | 5.00E-20 | lysophospholipase [Dechlorosoma suillum PS] |
| trEMBL | tr|I3SY68|I3SY68_LOTJA | 5.00E-125 | Uncharacterized protein {ECO:0000313|EMBL:AFK45210.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01973 | 41368 | 44471 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001973s00030840.1 | PF12697.2 | Abhydrolase_6 | 2 | 141 | 2.90E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.435 |
| SRR1783600 | control | 2.264 |
| SRR1783602 | moderate drought stress | 3.934 |
| SRR1811619 | moderate drought stress | 3.628 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.106 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.541 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.807 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.823 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.833 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.258 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.209 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.876 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 6.021 |
| SRR2868004 | Drought Stress (root) | 6.528 |
| SRR2967015 | Control (root) | 10.038 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 8.502 |
| SRR9715740 | Leaf | 10.398 |
| SRR9715741 | Leaf | 7.188 |
| SRR9715739 | Root | 0.626 |
| SRR9715742 | Root | 1.094 |
| SRR9715743 | Root | 2.130 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.324 |
| SRR8749028 | MeJA induced 9h | 6.415 |
| SRR8749029 | MeJA induced 9h | 4.188 |
| SRR8749030 | Uninduced | 3.528 |
| SRR8749031 | Uninduced | 2.252 |
| SRR8749032 | Uninduced | 2.351 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 11.450 |
| SRR8400027 | Control - Root | 10.105 |