Gene detail information of Glyur001973s00030837 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G67080.1 | 4.00E-41 | abscisic acid (aba)-deficient 4 |
| NR | XP_003636964.1 | 1.49E-97 | hypothetical protein MTR_065s0045 [Medicago truncatula] |
| trEMBL | tr|G7ZY14|G7ZY14_MEDTR | 6.00E-98 | Neoxanthin synthase {ECO:0000313|EMBL:KEH21545.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01973 | 31078 | 33995 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001973s00030837.1 | PF14108.1 | DUF4281 | 127 | 187 | 3.40E-20 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.257 |
| SRR1783600 | control | 5.221 |
| SRR1783602 | moderate drought stress | 3.815 |
| SRR1811619 | moderate drought stress | 3.599 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.842 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.340 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 6.633 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.666 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.810 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.015 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.433 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 8.209 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 12.536 |
| SRR2868004 | Drought Stress (root) | 12.455 |
| SRR2967015 | Control (root) | 11.017 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 5.889 |
| SRR9715740 | Leaf | 4.583 |
| SRR9715741 | Leaf | 5.494 |
| SRR9715739 | Root | 0.630 |
| SRR9715742 | Root | 2.706 |
| SRR9715743 | Root | 2.668 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.735 |
| SRR8749028 | MeJA induced 9h | 5.205 |
| SRR8749029 | MeJA induced 9h | 2.758 |
| SRR8749030 | Uninduced | 1.640 |
| SRR8749031 | Uninduced | 0.432 |
| SRR8749032 | Uninduced | 1.114 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 9.927 |
| SRR8400027 | Control - Root | 8.787 |