Gene detail

Gene detail information of Glyur001973s00030832

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G38410.1	3.00E-74	Ribulose bisphosphate carboxylase (small chain) family protein
NR	AFK48034.1	4.49E-118	unknown [Lotus japonicus]
COG	YP_005070468.1	7.00E-29	ribulose 1,5-bisphosphate carboxylase/oxygenase small subunit [Arthrospira platensis NIES-39]
Swissprot	tr\|P07689\|RBS3_PEA	3.00E-112	Ribulose bisphosphate carboxylase small chain 3A, chloroplastic (Precursor)
trEMBL	tr\|I3T692\|I3T692_LOTJA	2.00E-118	Ribulose bisphosphate carboxylase small chain {ECO:0000256\|RuleBase:RU003627}

Sequence

Transcript Sequence

>Glyur001973s00030832.1
AGAACATTATTTCTGAATAGAGAAGTAAGGGAGAAGAAAAACATGGCCTCTATGATTTCCTCAGCAGCTGTGACGACAGTTAACCGCGCCTCTCCGGTACAAGCCGGCGTGGTGGCTCCATTCACTGGCCTGAAATCCATGGCTGGCTTCCCAGTTAGGAAGGTCAACAATGACATTACCTCCATTGCAAACAATGGTGGAAGAGTAACATGCATGCAGGTGTGGCCTACGACTGGGAAGAAGAAGTTTGAGACTCTTTCCTACCTTCCACCACTGAGCAGAGAGCAATTGTTGAAAGAGATAGAATACCTTCTTAGGAAGGGTTGGATTCCTTGCTTNGAATTCGAGTTGGAGAAAGGGTTTGTATACCGTGAGAACCACAGGTCACCGGGATACTATGATGGAAGGTATTGGACAATGTGGAAGCTGCCAATGTTTGGGTGCACAGATGCCACACAAGTGTTGAAGGAGCTTGATGAGGCTGTGAAGGCATACCCCAAGGGCTTTGTCCGCATCATTGGATTTGACAATGTTCGCCAAGTTCAATGCATCAGCTTCATTGCTCACAGGCCCCCTGGCTACTAATCCTCATGATGATATCTATATATATATTTACAATCAAAATTAAGAGGGCATTCATTTGAAGCCTCCCCTTTTGTGTTGCTTGGGAAAATGGTTTTACTTTGGCATTTGTAAGAGCATAATATTTCCCAACATTTGTTCTGCTTTTTTTCCTTTTCCTTTTCCTTTTCCTTTTCCTTTTCCTTTTCCTTTTCTGAGAAATGTCATCCTGTGTTTTTTTGGATTTCAAAATGCAAATGAAAATGGACATGAGTTGTTGATGAATGAAATGCCATCCTGTGTCTTACACCTCTCTTTGGATGTTTATATTTTGAATTGATTTGTTTCTTAATGCACTTAATCTAAAATGAAAGTAATAACTTCAACTATATGCTAGCTACTGTTGTCATGAAGCTACTGAATTTCACCAAATTGACACCTCAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01973	5471	7032	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01602	rbcS	EC:4.1.1.39	Carbon metabolism	map01200
			Glyoxylate and dicarboxylate metabolism	map00630
			Carbon fixation in photosynthetic organisms	map00710

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001973s00030832.1	PF12338.3	RbcS	15	58	3.90E-21
Glyur001973s00030832.1	PF00101.15	RuBisCO_small	82	191	1.80E-40

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.036
SRR1783600	control	0.036
SRR1783602	moderate drought stress	0.076
SRR1811619	moderate drought stress	0.037

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.429
DRR006520	Root Summer glycyrrhizin high producing strain	0.401
DRR006521	Root Winter glycyrrhizin high producing strain	0.332
DRR006522	Root Winter glycyrrhizin high producing strain	0.324
DRR006523	Root Summer glycyrrhizin low producing strain	0.328
DRR006524	Root Summer glycyrrhizin low producing strain	0.329
DRR006525	Leaf Summer glycyrrhizin high producing strain	1463.349
DRR006526	Leaf Summer glycyrrhizin high producing strain	1452.481

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.381
SRR2868004	Drought Stress (root)	0.691
SRR2967015	Control (root)	0.306

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1226.059
SRR9715740	Leaf	889.195
SRR9715741	Leaf	462.512
SRR9715739	Root	0.049
SRR9715742	Root	0.585
SRR9715743	Root	0.237

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.030
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.112

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.000
SRR8400027	Control - Root	0.017