Gene detail

Gene detail information of Glyur001972s00034435.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G03795.1	2.00E-112	Exostosin family protein
NR	XP_004497579.1	0	PREDICTED: probable glycosyltransferase At5g03795-like [Cicer arietinum]
COG	YP_677520.1	4.00E-07	hypothetical protein CHU_0899 [Cytophaga hutchinsonii ATCC 33406]
Swissprot	tr\|Q9FFN2\|GLYT3_ARATH	8.00E-137	Probable glycosyltransferase At5g03795
trEMBL	tr\|G7I9D2\|G7I9D2_MEDTR	0	Exostosin family protein {ECO:0000313\|EMBL:AES60658.2}

Sequence

Transcript Sequence

>Glyur001972s00034435.1
ATGGATCCCGTGAATGAATCTGATGTACCTNACCTGAGAAAGAAGCAGCGAAGAAAGTTCAGCATCTTAGATAGAACCGAAGTCGGTTTACTACAAGCACGAGCTGCTATTAGAGAAGCCAGAAATAGTAATCAAACACAAGATCCTGATTATGTTCCATTAGAAGGGGAGCCTCCAGTTTTCCACAATGGACCTTGCAAAAGCATATACTCCATGGAGGGGAACTTCATCCATGCTATTGAGATGAATGACCAATTCAGAACAAGAGATCCTGAGAAAGCACATGTCTTTTTCCTTCCTTTCAGTGTGGGGCCAGAGACTTCATTCTCCATTCCCTACCTACACGAGAACTCTATTCGTGTGCTTTGCAATGCCAACACCTCAGAGAGATTCAACCCTGCAANGGATGTTTCTTTCCCAGAAATCAATCTCCAAACCGGTTCGATAAACGGTTTCATAGGTGGTCCATCTGCATCTAAACGTCCAGTTTTGGCTTTCTTTGCAGGAGGGCTACATGGCCACATAAGGTCCATTCTTCTTGAGTATTGGGAAAACAAGGACCAAGACATTCAGGTTCAAAAGTACCTTCCAAAGGGTGGTGTTTCTTACTATGACATGCTTAGGAAGAGCAAGTTCTGTCTTTGCCCAAGTGGGTATGAGGTGGCTAGCCCCAGGGTGGTGGAGGCAATCTACACCGGGTGTGTTCCGGTTCTCATCTCGGAGCATTATGTCCCTCCGTTCGGTGACGTCTTGAACTGGAAGAGTTTCTCGGTCGAGCTTTCGGTTAAGGACATTCCAAACTTGAAGGAGATCTTGATGAGGATTTCTNCGAGTCAGTATATAAGGATGCAGAGAAGGGTGGGACAAATTCGGAGACACTTTGAGGTACATTCTCCCCCTAAACGATTNGATGTGTTCCATATGATCCTTCATTCTGTTTGGCTTCGAAGACTCAACTTCAGACTCCATGATGATCAATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01972	30537	32817	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT47

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001972s00034435.1	PF03016.10	Exostosin	112	275	7.10E-37

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.524
SRR1783600	control	1.585
SRR1783602	moderate drought stress	0.262
SRR1811619	moderate drought stress	0.315

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.000
SRR2868004	Drought Stress (root)	0.000
SRR2967015	Control (root)	0.115

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.068
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.000
SRR9715739	Root	0.000
SRR9715742	Root	0.158
SRR9715743	Root	0.073

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.564
SRR8749028	MeJA induced 9h	0.398
SRR8749029	MeJA induced 9h	0.744
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.028

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.225
SRR8400027	Control - Root	0.164