Gene detail

Gene detail information of Glyur001972s00034432.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT3G10050.1	L-O-methylthreonine resistant 1
NR	XP_003542539.1	PREDICTED: threonine dehydratase biosynthetic, chloroplastic-like [Glycine max]
COG	YP_003848428.1	threonine dehydratase, biosynthetic [Gallionella capsiferriformans ES-2]
Swissprot	tr\|Q9ZSS6\|THD1_ARATH	Threonine dehydratase biosynthetic, chloroplastic (Precursor)
trEMBL	tr\|I1LZD0\|I1LZD0_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA13G21230.1}

Sequence

Transcript Sequence

>Glyur001972s00034432.1
CACATTCATGCCTATATATTTTCCTTCTCTCCTTTCCTCGTTCTCTCGTCCTTCAATCAAACATCGGAACCCAACAACAGTCATACAGTAACAATAAATAATATAGTAAGTACTTGTGTTGTTTTTAAATTATAAAATTAATAAACCTTTGGCTCTCACCAACTTCCATTTGCGTCTCAGAGACAAAGACCCCAAATCAATTTTCCATCGCCATGGAGGCGCTACGATTCTCCGCCACCACCCACCCTCCCCAACGGCCACCACTCCTCCACCGCCACCACAAAATGCAGCGCACTACCACAACCACCCTCGCCGCAAACCCTCGCCGGAATCCCTTCATCGCCGCCACTCTCTCAAAGCCCACAGAGACAGTTCCCTCACCCCCTTCACTGTCTCCTCCTCCTCCTCCTTTAACGGTTTCGCCCGATTCNCTTCAGTACCCGCCCGGTTACGTCGGTGCGGTTCCCGACCGGTCGCGTTCCGACGGCGGCGACGGCGGCATAATCAGTGCCATGGGTTATTTGACCAATATACTCTCTTCCAAGGTCTATGACGTGGCCATTGAGTCCCCTCTTCAGTTGGCGCCAAGGCTATCTGAAAGACTTGGGGTTAACCTCTGGCTCAAACGCGAGGATCTGCAACCNGTTTTCTCATTTAAGCTCCGTGGAGCTTATAATATGATGGCTAAACTTCCAAAGGAACTTTTGGAGAAAGGGGTTATCTGCTCTTCTGCTGGAAATCATGCTCAAGGAGTTGCTTTGGCTGCCAAGAGATTGAATTGCAATGCCGTGATTGCAATGCCAGTTACCACACCGGATATCAAGTGGAAATCTGTGGAGAGGCTTGGTGCTACTGTTGTCCTCATCGGGGATTCCTATGATGAAGCGCAAGCGTATGCTAAGAAGCGTGCAAAAGAGGAGGGTCGGACATTCATACCTCCTTTTGATCATCCTGATGTCATCATGGGTCAGGGAACCGTTGGGATGGAAATCGTGCGCCAAATGCCGGGTTCAGTGCATGCGATCTTTGTGCCTGTGGGAGGTGGTGGTCTCATCGCTGGTATTGCTGCTTACGTGAAGAGGGTTTCTCCACAGGTGAAGATTATTGGGGTGGAGCCCACTGATGCAAATGCAATGGCATTGTCACTCCATCATGGTCACAGAGTGATTTTGGACCAGGTTGGAGGATTTGCAGATGGTGTAGCTGTTAAAGAGGTTGGTGAAGAAACTTTTCGCCTGTGCCAGGAGTTGGTAGATGGCATTGTCCTTGTAAACCGTGATTCAATTTGTGCATCGATAAAGGACATGTTTGAGGAAAAAAGGAGCATATTAGAACCAGCAGGTGCTCTTGCTCTTGCTGGAGCTGAGGCATACTGCAAGTATTATGGGATCAAGGGGGAAAATGTTGTAGCAATAACCTCTGGAGCAAACATGAATTTCGATAAACTTAGGGTGGTAACCGAACTTGCTAATGTTGGCCGTAAACAAGAGGCTGTGCTGGCAACTGTTATGCCAGAGGAGCCCGGCAGTTTCAAACGGTTTTGTCAATTGGTGGGGCAGATGAATATCACAGAATTCAAATACAGATATAACTCCAATGAGAAGGCTGTTGTCCTTTACAGTGTTGGGGTTCACACAGTCTCAGAACTAAGAAAAATGCAGGAGAGAATGGAATCTTCTCAGCTTAAAACTTACGACCTCACACAGAGTGACTTGGTGAAAGATCATTTGCGTTACCTGAATGAGGTTCTTTGCCGTTTTACCTTCCCAGAAAGACCCGGTGCATTGATGAAATTCTTGGACTCCTTCAGTCCACGTTGGAATATCAGTCTATTCCATTACCGTGGGGAGGGTGAAACTGGAGCAAATGTATTAGTTGGAATACAGGTTCCCAGGGATGAAATGGATGAGTTCCATGATGTTGCCAACAGACTTGGGTATGACTATAAAGTGGTGAATAGTGATGATGACTTCCAGCTTTTAATGCATTGATTGATTTTTATTATTGTTATTTATTTTAGGCACTTGTTTGCCATTAATTATTGTATGTGTAATATTTTAGTGGAGTAGATTATCATGTTTATTTCAACAGTCGACATCAAAGACAGAGAGAGGAAGGGGGAAAAGGCGGAAAGGAAATGGCCTCCAAACATGTCACAAGTTGTTGACTACTACTAGAGGGAAAACGTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01972	19265	24115	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01754	E4.3.1.19, ilvA, tdcB	EC:4.3.1.19	Carbon metabolism	map01200
			Biosynthesis of amino acids	map01230
			Glycine, serine and threonine metabolism	map00260
			Valine, leucine and isoleucine biosynthesis	map00290

Gene Ontology

biological_process

GO:0006520 cellular amino acid metabolic process

GO:0009097 isoleucine biosynthetic process

molecular_function

GO:0004794 L-threonine ammonia-lyase activity

GO:0030170 pyridoxal phosphate binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001972s00034432.1	PF00291.20	PALP	118	404	1.90E-75
Glyur001972s00034432.1	PF00585.13	Thr_dehydrat_C	417	506	9.10E-24
Glyur001972s00034432.1	PF00585.13	Thr_dehydrat_C	510	589	9.40E-24

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	23.910
SRR1783600	control	23.867
SRR1783602	moderate drought stress	20.882
SRR1811619	moderate drought stress	20.940

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	21.925
DRR006520	Root Summer glycyrrhizin high producing strain	21.791
DRR006521	Root Winter glycyrrhizin high producing strain	9.389
DRR006522	Root Winter glycyrrhizin high producing strain	9.229
DRR006523	Root Summer glycyrrhizin low producing strain	18.151
DRR006524	Root Summer glycyrrhizin low producing strain	18.693
DRR006525	Leaf Summer glycyrrhizin high producing strain	10.743
DRR006526	Leaf Summer glycyrrhizin high producing strain	10.780

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	34.546
SRR2868004	Drought Stress (root)	23.287
SRR2967015	Control (root)	22.022

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	15.919
SRR9715740	Leaf	13.575
SRR9715741	Leaf	16.801
SRR9715739	Root	23.623
SRR9715742	Root	36.903
SRR9715743	Root	38.419

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	43.898
SRR8749028	MeJA induced 9h	27.208
SRR8749029	MeJA induced 9h	33.219
SRR8749030	Uninduced	19.581
SRR8749031	Uninduced	19.735
SRR8749032	Uninduced	24.167

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	32.520
SRR8400027	Control - Root	31.949