Gene detail

Gene detail information of Glyur001968s00040249.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G27690.1	3.00E-145	cytochrome P450, family 94, subfamily C, polypeptide 1
NR	KEH42061.1	0	cytochrome P450 family 94 protein [Medicago truncatula]
COG	YP_004596977.1	5.00E-30	Unspecific monooxygenase [Halopiger xanaduensis SH-6]
Swissprot	tr\|Q9ZUX1\|C94C1_ARATH	5.00E-178	Cytochrome P450 94C1
trEMBL	tr\|A0A072VKA5\|A0A072VKA5_MEDTR	0	Cytochrome P450 family 94 protein {ECO:0000313\|EMBL:KEH42061.1}

Sequence

Transcript Sequence

>Glyur001968s00040249.1
ATGGAACTTCTTGAAGCTTTAGCTACCAGCACCTACACGCTGTTTCATTCCTTATTGAGTGATGTCTCNTTTGGTTATTCTCTGATCATCACCGTCGCTATAATAATAATAATACTAATTATAATCACTGCACCTCGTTTTCCCAGAAGAATGAGTACTAGCATCCTGTGCAGTTGCGAAACATGCCAGGCTTATCTAACTTCAAGCTGGTCGAAAGACTTCGACAACCTCTGCGATTGGTATGCACATCTACTCCGAAACTCCCAAACAAAGACCATCCACATCCACGTCTTGAGGAACACGATCACCGCGAACAGNGACAACGTGGAGTACATCCTCAAGACGAGGTTCGACAACTACCCAAAGGGGAAAACGTTTTCCATGATCCTCGGCGACTTTCTCGGCCGAGGAATCTTCAACGTGGACGGCGAGTCGTGGCGGTTCCAGAAGAAGATGGCAAGCCTTGAACTCAACAACCACTCCATAAGGTCNTTCGCCTTTGAAGTCGTCAACTACGAAATCCAACACCGACTCATCCCTCTCCTAATAACCAACCACACAAACGGCGTCGTTTTAGACTTGCAGGACGTTTTCAGGAGATTCTCCTTCGACAGCATTTGTAGATTCTCCTTCGGNTTAGACCCGATGTGCCTGGAGAAGTCGTTACCCATGTCGGAGTTCGCGGTTATAAAGCAGAGAAGGGAAGTGGGGTTTTCTAGCCACAGAGACTTGTTGTCCCGTTTCATGAGTACNGTCCAAGACGACAACTACCTCAGAGACATCGTCATAAGCTTCCTATTGGCCGGTCGTGACACCGTGGCATCGGCACTTACCAGTTTCTTTTGGCTGTTGGCAAAACACCCGGAGGTGGAGTCAGAGATTCTACTGGAGGCGAATCGAGTAATTGGACCACACAATAACAACAACATCAACTTCGAAGAGCTTAGACAATTGCACTATCTACAAGCAGCGGCACATGAGAGTATGAGGTTGTTTCCCCCAATTCAGTTCGACTCCAAGTTCTGCTTGGAGGACGATATGTTACCAGATGGCACCATGGTGAAAGGTGGGACTAGGGTTACTTACCACCCCTACGCGATGGGTAGGTTGGTGGAATTGTGGGGCAAGGATTGTTTGGAGTTTAAGCCCGAGAGGTGGTTGAAGAATGGTGTGTTTCACCCCAAGAATCCATTCAAGTACCCGATTTTTCAGGCTGGGTTGAGGGTNTGTATTGGTAAGGAAATGGCTTTGATGGAGCTTAAAAGTGTGGCGCTTTCACTGCTTCGGAGGTTCCACATCGAATTGGTAGAANCTTTTAACCACCCTCGATTCTCTCCTGGCCTCACTGCCACTTTTGGTTGTGGCCTTCCCGTAATGGTTCGTGAAAGAGGAGAACCCACCAACACCAACAGTAATACCCCGGCCTCATCCTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01968	2459	4253	+

Gene family

Gene family	subfamily
Cytochrome P450 Family	CYP94C1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0005506 iron ion binding

GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen

GO:0020037 heme binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001968s00040249.1	PF00067.17	p450	102	219	2.00E-07
Glyur001968s00040249.1	PF00067.17	p450	233	437	2.00E-42

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.025
SRR1783600	control	0.025
SRR1783602	moderate drought stress	0.000
SRR1811619	moderate drought stress	0.000

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.150
DRR006520	Root Summer glycyrrhizin high producing strain	0.148
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.153
DRR006524	Root Summer glycyrrhizin low producing strain	0.230
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.320
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.216

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.482
SRR2868004	Drought Stress (root)	1.237
SRR2967015	Control (root)	0.772

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.476
SRR9715740	Leaf	1.565
SRR9715741	Leaf	1.409
SRR9715739	Root	0.018
SRR9715742	Root	0.392
SRR9715743	Root	0.032

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.012
SRR8749031	Uninduced	0.343
SRR8749032	Uninduced	1.303

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.344
SRR8400027	Control - Root	0.237