Gene detail

Gene detail information of Glyur001966s00032586

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G75220.1	3.00E-130	Major facilitator superfamily protein
NR	KEH40153.1	0	sugar porter (SP) family MFS transporter [Medicago truncatula]
COG	YP_006544343.1	1.00E-54	D-xylose-proton symporter [Methanoculleus bourgensis MS2]
Swissprot	tr\|Q9FRL3\|ERDL6_ARATH	3.00E-173	Sugar transporter ERD6-like 6
trEMBL	tr\|A0A072VFC5\|A0A072VFC5_MEDTR	0	Sugar porter (SP) family MFS transporter {ECO:0000313\|EMBL:KEH40153.1}

Sequence

Transcript Sequence

>Glyur001966s00032586.1
TTCTCTTTGTTTGGTTCTTTGTCCAATGTGGGTGCCATGGTTGGAGCAATAGCCAGTGGTCAAATTGCTGAGTATGTAGGGCGCAAAGGGTCTTTGATGATTGCATCCATTCCAAATATTATTGGTTGGCTTTTCATCTCATTTGCAAAAGTGCCGGTATATATAGCAGAGATATCACCTCAAAACTTGAGGGGAGGTCTGGTTTCAGTTAACCAGCTTTCTGTCACCATTGGAATAATGCTGGCTTATCTGCTGGGACTTTTTGTTCAATGGAGATTCCTTGCAATTTTAGGAATTTTACCATGTACATTATTGATACCTGGTCTATTTTTCATTCCTGAGTCTCCTAGATGGCTGGCAAAAATGGGCATGACAGAAGAATTTGAAACCTCCTTGCAAGTGCTCAGAGGTTTTGAAACTGATATTTCTGTTGAAGTCAATGAAATTAAGAGTGCTGTTGCATCAGCAAACAGAAGAACTACAGTTCGATTTGCAGAACTCAAACAAAGAAGATATTGGCTTCCCTTGATGATTGGAATTGGACTGCTTATTTTGCAACAGCTTTCTGGGATTAATGGTGTTCTTTTCTATTCCAGTACCATCTTTCATAATGCTGGAATTAGTTCGAGTGACGTGGCTACATTTGGAGTTGGTGCTGTTCAGGTTCTTGCCACTAGTTTAACTTTGTGGTTAGCAGACAAATCTGGTCGCCGGCTTCTACTTATTGAATATATATCAGTGAATTCTTCTTTATATGAGATATTGAGCCTCTTGTCCATGGCTGGGGTCGTGGCCATGGTTATTGCGTTCTCTTTGGGAATGGGAGCTATGCCATGGATTATAATGTCTGAGATTCTTCCAATTAACATCAAAGGCCTTGCTGGAAGTGTTGCAACACTTGCCAACTGGTTCTTTTCATGGTTGGTTACATTGACAGCAAATTTNCTCTTGGACTGGAGCTCTGGAGAAGCTACCTCTGTTTGTTCTTGTCAGGAACCTTCACCATATATACAGTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01966	44162	48905	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055085 transmembrane transport

cellular_component
GO:0016021 integral component of membrane

molecular_function

GO:0005215 transporter activity

GO:0022857 transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001966s00032586.1	PF00083.19	Sugar_tr	2	50	0.0001
Glyur001966s00032586.1	PF00083.19	Sugar_tr	51	321	1.80E-55
Glyur001966s00032586.2	PF00083.19	Sugar_tr	2	50	9.20E-05
Glyur001966s00032586.2	PF00083.19	Sugar_tr	51	318	3.10E-55

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.672
SRR1783600	control	1.532
SRR1783602	moderate drought stress	1.008
SRR1811619	moderate drought stress	0.961

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.374
DRR006520	Root Summer glycyrrhizin high producing strain	1.899
DRR006521	Root Winter glycyrrhizin high producing strain	0.430
DRR006522	Root Winter glycyrrhizin high producing strain	0.471
DRR006523	Root Summer glycyrrhizin low producing strain	1.450
DRR006524	Root Summer glycyrrhizin low producing strain	1.213
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.090
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.090

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	18.468
SRR2868004	Drought Stress (root)	18.372
SRR2967015	Control (root)	18.353

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.614
SRR9715740	Leaf	1.047
SRR9715741	Leaf	0.882
SRR9715739	Root	5.399
SRR9715742	Root	6.486
SRR9715743	Root	6.695

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.034
SRR8749028	MeJA induced 9h	6.341
SRR8749029	MeJA induced 9h	2.452
SRR8749030	Uninduced	11.276
SRR8749031	Uninduced	5.762
SRR8749032	Uninduced	4.621

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	10.229
SRR8400027	Control - Root	8.878