Gene detail

Gene detail information of Glyur001966s00032585

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G19440.1	0	3-ketoacyl-CoA synthase 4
NR	NP_001267518.1	0	uncharacterized protein LOC100797855 [Glycine max]
COG	NP_285649.1	3.00E-12	chalcone synthase [Deinococcus radiodurans R1]
Swissprot	tr\|Q9LN49\|KCS4_ARATH	0	3-ketoacyl-CoA synthase 4
trEMBL	tr\|I1M8B7\|I1M8B7_SOYBN	0	3-ketoacyl-CoA synthase {ECO:0000256\|PIRNR:PIRNR036417}

Sequence

Transcript Sequence

>Glyur001966s00032585.1
ATGACAATTACCTTTGCGACGAAGGAAGAAGACGACGCCGTCAGGGTTCAGATCCAACAGCAGAGCATGAATCTCAAATACGTAAAATTATGTTACCACCACCTAATCTCTAACCTGTTAACCTTATGTGTAGTCNCATTGATCATAATAACATTAATCCAAGCCTCCCAAACCACAAGCCTCAAGCATCTCCACCACCTTTGGNTGCACCTCCAATACAACCTCCTCACCTGTTCCGCCTTCATCGTCTTCGGCCTTACTCTCTACGTCGTCACGCGCCCACGCACCGTCTACCTCGTCGACTTCTCCTGTTTTCGCCCCGCCGATCACCTCAAANCCTCCTTCCACAAATTCATGGAGAACTCCCGCCTCACTGGGGTCTTCGAGGATTCCTCCCTAGAGTTCCAGCGTAAGATCCTCTTGCGCTCAGGGCTCGGGGAGGAAACCTACCTCCCCGAGACCGTGCATTCCATTCCATTTCGGCCATCTTTGGCCACGGCGATGGCTGAAGCCGAGGATGCAATGTTTGGTGCCTTGGATAACCTATTCCTCAACACCGGCCTCAAGCCAAAGGATATTGGGATCCTTGTTGTGAATTGCNGTANGTTTCACCCCAACCCTTCCCTCTCTGCCATGATTGTGAACAAGTACAAGCTGAGGGATAACATTAGGAGCTTTAATTTGGGGGGAATGGGGTGCAGTGCTGGGGTTATAGCTGTTGATCTTGCTAGGGACTTGTTGAGTGTTCATAGGAATACTTATGCTGTTGTTGTCAGCACTGAGAATATTAGTCAGTATTGGTACTTAGGGAACAAGAAATCCATGCTCATTCCCAATTGCTTGTTTAGAGTTGGGTGTTCAGCGCTTCTGCTCTCCAACAAGTCCTCCGATAGAAGGAGGGCAAAGTATAGGCTTGCTCATGTGGTGAGGACTCATCGCGGGGCTGATGATAAGGCTTTTAGATGTGCTTCTATNGAACAGGATGATGCTGGGAAGACTGGTGTTTCCCTGTCCAAAGATTTGATGGCAATAGCTGGGACAGCACTTAAAACCAACATCACCACCCTTGGCCCCTTGGTGCTCCCGGTAAGTGAGCAGCTTCTGTTTCTTGCTACCTTGATCGTGAGGAAGTTGTTCCAGGCTGACGTGAAGGCTTACATACCGGATTTCAAGCTCGCATTCAACCATTTCTGCATTCATGCTGGGGGTAGGGCAGTGATTGATGAGTTGGAGAANAGCCTCCAGCTGCTTCCCGTGCATGTGGAGGCTTCTAGGATGACCCTTCACCGTTTTGGGAACACTTCGTCTAGCTCCATTTGGTATGAGTTGGCATATACGGAGGCCAAGGGGAGGGTGAGGAAGGGCAATAATAGGATTTGGCAAATTGCATTTGGAAGTGGCTTTAAGTGTAATAGTGCAGTCTGGGAGGCACTTCGTAATGTGAGGCCATCTCCTAATGGACCCTGGGAAGATTGCATTGATAAGTATCCTGTGGAAATAGCCACATAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01966	41303	42811	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K15397	KCS	EC:2.3.1.199	Fatty acid elongation	map00062

Gene Ontology

biological_process

GO:0006633 fatty acid biosynthetic process

GO:0008152 metabolic process

cellular_component
GO:0016020 membrane

molecular_function

GO:0003824 catalytic activity

GO:0016746 transferase activity, transferring acyl groups

GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001966s00032585.1	PF08392.7	FAE1_CUT1_RppA	89	378	9.20E-137
Glyur001966s00032585.1	PF02797.10	Chal_sti_synt_C	386	473	2.30E-09

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.637
SRR1783600	control	0.630
SRR1783602	moderate drought stress	0.274
SRR1811619	moderate drought stress	0.267

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.174
DRR006520	Root Summer glycyrrhizin high producing strain	0.121
DRR006521	Root Winter glycyrrhizin high producing strain	0.365
DRR006522	Root Winter glycyrrhizin high producing strain	0.433
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	13.331
DRR006526	Leaf Summer glycyrrhizin high producing strain	13.312

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.384
SRR2868004	Drought Stress (root)	0.595
SRR2967015	Control (root)	0.078

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.225
SRR9715740	Leaf	24.558
SRR9715741	Leaf	13.662
SRR9715739	Root	1.957
SRR9715742	Root	0.462
SRR9715743	Root	0.741

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.799
SRR8400027	Control - Root	0.590