Gene detail

Gene detail information of Glyur001966s00032582.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G42770.2	2.00E-72	Maf-like protein
NR	XP_006600189.1	1.48E-127	PREDICTED: uncharacterized protein LOC100792444 isoform X2 [Glycine max]
COG	YP_003712941.1	3.00E-11	hypothetical protein XNC1_2741 [Xenorhabdus nematophila ATCC 19061]
Swissprot	tr\|Q1A173\|RADL6_ARATH	8.00E-30	Protein RADIALIS-like 6
trEMBL	tr\|K9P1V7\|K9P1V7_9ROSI	2.00E-108	Maf-like protein {ECO:0000313\|EMBL:AFY26891.1}

Sequence

Transcript Sequence

>Glyur001966s00032582.1
ATGGCCTCAAGCTCAGTTTGGACAACAAAGCAGAACAAGAAGTTTGAGAATGCTTTGGCCATCTATGACAAGGACACCCCAGATAGGTGGCAGAAGCTGGCGAGGGCCGTCGGAGGGAAGACGGTGGAGGAAGTGAAAAGGCATTATGAGATGCTGGTGGAAGATTTGAAGCAGATTGAGGAAGGCCATGTTCCCTTACCCAATTACAGAAATGCTCCAAGAAGCATCAAAGGTTACACCTTCACAGATGAAGAACAAAGGTCCGGGGTGCAGTTGAGTTACTCGTTCCATTTGTTCCCGCCGCCATCCATTTGGATTTTGGAGTTAGAGCTTGAGCTTGCGATGGAAGCTGCAAGTGCAACTCCTTCCTACAAGATTATTTTGGGTTCTTCCTCCGTCGCACGCCGCAAGATATTATCCGAAATGGGATACCAATTCACAACAATGACTGCAGATATTGATGAGAAGAGCATCCGAAAGGAAACTCCAGAAGAGTTAGTTATGGCTCTAGCAGAAGCCAAGGCCAATGCCATTATATCCAAACTTCAAACTACTGGTAATCAAGAGAGGTTTGATGAAACGACAATTTTAATTGCGGCAGACACAGCAGAAGCCATCTTACAGAGGCTCCCTGTTGATGACTACTTAAAGGATGCTGAGCCTGCATTATTAATTACTTCTGACCAAGTGGTGGTCTATGAAGGTTTGATTAGGGAAAAGCCATCTAGCAAAGAAGAAGCTCGACAATTCTTGAAAGATTATTCTGGAAGGCAAGCAGCAACTGTGGGATCTGTATTAGTTACAAACCTCAAAACAGGATTGAGAAAAGGAGAATCAGATCGTGTGGAGATCTATTTCAATGAAATACCTGATGAAATCATCGAGAAGCTGGTCGATGAGGGAATTACTCTCAACGTTGCTGGGGGGCTGATAATAGAGCACCCTTCAATATTTCCATTTGTCAAAGAAGTGGTAACACCTGCATCCCAAGGAAAACTGACTGCAGAAGCTAAGAGAGAAAGCTTCAACTTGAACGCGCGGTGCAAGGATTTCCAATGTGGCTCCAAACACCCTGTTAGTTAGGGAAGCTATGTCATTAACTGTGCATTGAATTATGGAATATCCAAGAATAAATTATGTATTGAAAATTCTAATCACGGCAAATTGATGATTCCGGGTTCTATTTTATTTGAACACTTAATTTTGCAAATTTGCTTTAGGATGTCCAATTTTTTAGCCTACTGTGGCTAAAATCTCAACAAAAAACAAACACTAACTCGTTAAGTAGGGCTTGTTTGTTATCAAGAATTCCACTGTCTGCACTTCAAGAACTCTACTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01966	7474	16626	+

Gene family

Gene family	subfamily
Transcription Factors Family	MYB-related

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0005737 cytoplasm

molecular_function

GO:0003677 DNA binding

GO:0003682 chromatin binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001966s00032582.1	PF00249.26	Myb_DNA-binding	6	51	2.10E-06
Glyur001966s00032582.1	PF02545.9	Maf	125	316	5.80E-33

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.990
SRR1783600	control	5.253
SRR1783602	moderate drought stress	6.130
SRR1811619	moderate drought stress	6.130

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	12.635
DRR006520	Root Summer glycyrrhizin high producing strain	11.995
DRR006521	Root Winter glycyrrhizin high producing strain	18.330
DRR006522	Root Winter glycyrrhizin high producing strain	18.446
DRR006523	Root Summer glycyrrhizin low producing strain	8.598
DRR006524	Root Summer glycyrrhizin low producing strain	8.207
DRR006525	Leaf Summer glycyrrhizin high producing strain	15.836
DRR006526	Leaf Summer glycyrrhizin high producing strain	15.614

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	18.864
SRR2868004	Drought Stress (root)	18.230
SRR2967015	Control (root)	13.690

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	17.060
SRR9715740	Leaf	18.606
SRR9715741	Leaf	19.796
SRR9715739	Root	3.305
SRR9715742	Root	7.127
SRR9715743	Root	5.059

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	34.291
SRR8749028	MeJA induced 9h	17.052
SRR8749029	MeJA induced 9h	23.256
SRR8749030	Uninduced	17.292
SRR8749031	Uninduced	16.520
SRR8749032	Uninduced	14.805

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	20.256
SRR8400027	Control - Root	19.005