Gene detail information of Glyur001963s00029202 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G42710.1 | 3.00E-35 | |
| NR | XP_006584921.1 | 0 | PREDICTED: uncharacterized protein LOC102668494 [Glycine max] |
| trEMBL | tr|K7L554|K7L554_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G06180.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01963 | 27950 | 31714 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001963s00029202.1 | PF14309.1 | DUF4378 | 727 | 873 | 5.80E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.345 |
| SRR1783600 | control | 2.374 |
| SRR1783602 | moderate drought stress | 1.612 |
| SRR1811619 | moderate drought stress | 1.627 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.159 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.241 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.072 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.070 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.907 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.829 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.311 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.301 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 12.195 |
| SRR2868004 | Drought Stress (root) | 12.973 |
| SRR2967015 | Control (root) | 9.486 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.934 |
| SRR9715740 | Leaf | 3.908 |
| SRR9715741 | Leaf | 1.822 |
| SRR9715739 | Root | 0.048 |
| SRR9715742 | Root | 1.955 |
| SRR9715743 | Root | 1.956 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.132 |
| SRR8749028 | MeJA induced 9h | 0.043 |
| SRR8749029 | MeJA induced 9h | 0.049 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 9.548 |
| SRR8400027 | Control - Root | 14.834 |