Gene detail

Gene detail information of Glyur001962s00035253

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G71695.1	3.00E-102	Peroxidase superfamily protein
NR	NP_001242769.1	0	peroxidase precursor [Glycine max]
Swissprot	tr\|Q96520\|PER12_ARATH	6.00E-127	Peroxidase 12 (Precursor)
trEMBL	tr\|C6TAQ5\|C6TAQ5_SOYBN	0	Putative uncharacterized protein {ECO:0000313\|EMBL:ACU18907.1}

Sequence

Transcript Sequence

>Glyur001962s00035253.1
GTCCTTATAAATAATGACCATATAGCTAGTGATCTCAAATCATTCTCAACAAGAAGCTAGGAAAACAAATTAAGATATGGCTAAGACTAGTACTAGTGTTTCCAATTACTCTCTTTTCTACTCTTTGCTCTTGATTTCTTCCATTCTCTTCATCACTTCACAATTCCATGCCTCTGAGGCACAATCCAATAAAAAGGCCCCAGTAGTGGAGGGACTGTCCTTTGATTTCTATTCCAAAACATGCCCCAACCTTGAATCCATTGTTAGAGAACATCTCAAGACTGTGTTTAAGCAGGACAATGGCCAAGCTCCTGGCTTACTTCGTATCTTCTTCCATGATTGCTTTGTTCAGGGATGTGATGGATCAGTGCTACTGGACGGGAGTCCAGGAGAAAGGGATGAACCAGCCAACATTGGCATAAGAACTGAAGCCTTGGAGACCATTGACAATATCAGGGCACTTGCCCACAAGGAGTGTGGAAAAATCGTCTCTTGTGCTGATATCACTGTCCTGGCAGCACGTGATGCTGTTTTCCTAACAGGAGGACCCGATTATGCAGTTCCATTAGGGAGAAGAGATGGCTTAAGCTTCAGCACATCAGGAACAAACAATCTCCCGTCACCCTTCAACACCACAGGTGTGACCCTCAACACATTCGCACCCAAAAACTTCGATGCTACAGACGTTGTTGCCTTATCAGGTGCACACACATTTGGTCGTGCACANTGTGGAACCTTCTTCAATAGGCTTTCCCCACAAGACCCAAACATGGACAAAACATTGGCCAAAAAACTTCAAGCCACTTGCCCAAGTGCAAGTTCAGGGAACACCACGAACTTGGACTTAAGGACACCAAATGTGTTTGACAATAAGTACTACCTTGACTTAATGAACCGTCAGGGTGTGTTCACCTCTGATCAGGACTTGCTTAGTGATGAGAGGACAAAGGGGTTAGTCAACGCTTTTGCGGTCAACCAAACCTTGTTCTTTGAGAAGTTTGTGGATGCTGTTATTAAGTTGAGCCAATTGGATGTGTTGACTGGAAACCAAGGTGAGATTCGTGATCAGTGCAATGTGATAAACAATAAGAAATCTATCTTGACATCTGTGGTTGAAGAAGGGGCACAATTGATTGATCTGCTCTAAATTGAGCCATAGTTAAATGTTACTTTGTGTGTTTTTGTTGGCTAATTATGTAATGTTTTTCATGGGAGACGATCGAAGGTTCTATGTATAATTTTGTGCCCTTTTAATGTTTCTTGTTTAACGTATGAGTCATGTAATAAGAATCGTTGATCAGCATATGTGCTTGAGTTTGCTACCCAAATTTAGCAAATATTGTGTGTGGAGAAACACACAAGATTTGTGTCTTTTAGTTTCACAACCATTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01962	39782	47584	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00430	E1.11.1.7	EC:1.11.1.7	Phenylpropanoid biosynthesis	map00940

Gene Ontology

biological_process

GO:0006979 response to oxidative stress

GO:0055114 oxidation-reduction process

molecular_function

GO:0004601 peroxidase activity

GO:0020037 heme binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001962s00035253.1	PF00141.18	peroxidase	63	299	3.20E-68

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	86.499
SRR1783600	control	87.030
SRR1783602	moderate drought stress	67.261
SRR1811619	moderate drought stress	66.835

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	204.305
DRR006520	Root Summer glycyrrhizin high producing strain	202.242
DRR006521	Root Winter glycyrrhizin high producing strain	5.859
DRR006522	Root Winter glycyrrhizin high producing strain	5.763
DRR006523	Root Summer glycyrrhizin low producing strain	29.546
DRR006524	Root Summer glycyrrhizin low producing strain	28.567
DRR006525	Leaf Summer glycyrrhizin high producing strain	209.360
DRR006526	Leaf Summer glycyrrhizin high producing strain	208.686

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	120.744
SRR2868004	Drought Stress (root)	56.537
SRR2967015	Control (root)	89.300

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	23.052
SRR9715740	Leaf	21.305
SRR9715741	Leaf	25.767
SRR9715739	Root	34.982
SRR9715742	Root	91.138
SRR9715743	Root	77.313

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.031
SRR8749028	MeJA induced 9h	0.029
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	140.769
SRR8400027	Control - Root	64.310