Gene detail information of Glyur001961s00036671 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G77180.3 | 9.00E-20 | chromatin protein family |
| NR | XP_003594547.1 | 5.84E-36 | SNW domain-containing protein [Medicago truncatula] |
| Swissprot | tr|O80653|SKIP_ARATH | 5.00E-31 | SNW/SKI-interacting protein |
| trEMBL | tr|G7IKW7|G7IKW7_MEDTR | 2.00E-36 | GAMYB-binding protein {ECO:0000313|EMBL:AES64798.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01961 | 2759 | 3744 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001961s00036671.1 | PF02731.10 | SKIP_SNW | 38 | 119 | 1.80E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.065 |
| SRR1783600 | control | 0.320 |
| SRR1783602 | moderate drought stress | 0.169 |
| SRR1811619 | moderate drought stress | 0.096 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.163 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.777 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.164 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.082 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.159 |
| SRR2868004 | Drought Stress (root) | 0.428 |
| SRR2967015 | Control (root) | 0.307 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.057 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.316 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.193 |
| SRR9715743 | Root | 0.133 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.139 |
| SRR8749028 | MeJA induced 9h | 13.599 |
| SRR8749029 | MeJA induced 9h | 14.942 |
| SRR8749030 | Uninduced | 9.379 |
| SRR8749031 | Uninduced | 7.784 |
| SRR8749032 | Uninduced | 11.270 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.162 |
| SRR8400027 | Control - Root | 0.227 |