Gene detail

Gene detail information of Glyur001960s00034843

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G10490.1	1.00E-13	Domain of unknown function (DUF1726) ;Putative ATPase (DUF699)
NR	XP_009629176.1	2.64E-15	PREDICTED: UPF0202 protein At1g10490-like [Nicotiana tomentosiformis]
Swissprot	tr\|Q9XIK4\|U202A_ARATH	8.00E-16	UPF0202 protein At1g10490
trEMBL	tr\|G7ISQ3\|G7ISQ3_MEDTR	1.00E-15	UPF0202 plant-like protein {ECO:0000313\|EMBL:AES64635.2}

Sequence

Transcript Sequence

>Glyur001960s00034843.1
TATATACTGCTGCATGAACATGAAAAGCTATCACAAGTTGAACTGTTGGTTGTCGATGAAGCCGCTGCTATTTCACTGCCAGTGGTGAAGCCTTTGCTAGGTCCATGTCTGGTGTTCCTGCCTTATACTGTTAATGGAACCAAATATTTGCAAGCTTGCAAGATGAGGTGAAATGACATGAAGGATACAAAGCAAAATGGCAGAAACCGCAGTTTCGTTTGCTCTAGTGCAAGTGCTCGAACTCCTGAAAGAAAAAGGAACTCTGCTGAAAGGCGTGCATAAAGAATTTGTGGATATAAAAGATGAACTTGAGAGCATTCAAGCCTTCCTCAAAGATGCAGATAGAAGGGCTGCAGATGAAGGGAATTCAAAAGATGGAATAAAAGTTTGGGTGAAGCAGCTGAGAGAATTATGCTTTCGCATAGAAGATGTCATTGCTGAGTACAATATTCATGTGACACAAAAGACTCATCGTCCAGTATTCTTAGCTTTCTTTCTAAAGATTTCTCACATAATCAAAACACTAAAGCCTCTTCATCATATCGCATTGGAGATTCAAGACATCAAAGTATCAGTTTGTAGAATCAAAGAAAGGAGTGATGGGTACAACTTTCAGTCTTCACTTGAACATGGATCAAGCAGCACTAGAGGAAATCAAAGTGGCAAATGGCATGATCCTCGATTGGTTTCCCTTTTCATTGAAGAAACTGAAGTCGTGGGATTTGACGACGCTAGGGAACAATTGGTTAATTGGTTAGTGGANGGAGCAGCAGTGCGCACTGTGATTTCAGTGGTAGGAATGGGAGGACTCGGAAAAACTACTCTTGCCAAGAAAGTTTTTGACAACCAGCGGGTGAAAGGGCACTTTGATAGCCATGCTTTCATCACAGTTTCTCAAACGTACACAGTAGAAGCCTTGTTGAGGAACATATTGAAACAGTTCTATAAGGAGACCGATGAGCCGATTCCCCGAGGCATAAACACTATGGATACCATGTCACTTATAACTGAAATGAGGCTTTACTTGCAGGAGAGGAAGTATGTAATTGTCTGTGATGATATATGGAAAGTGGATTTTTGGGATGAGATCCAACTTGCCACACTTGATAACAACATAGGAAGTAGGATAGTAATCACAACCCGGAACTTGGGTGTTGCAAATTATTGTAAGAAATCTTCTCTTGTTCGATTGCATAAGTTGCAACCCTTGCCTCCAAACAAAGCATGGGAACTCTTCTGCAAGAAGGCATTTCAATTTGATTTCAATGGAAACTGTCCACCAGAGCTAAAAGATATGTCCAATGAAATTGTTCAAAAATGCGAGGGGTTGCCACTTGCAATTGTGGCCATTGGAGGTCTTTTGTCAGCCAAAGACAAAACTGTGTTTGAATGGAAAAAATTATGTCAAAACCTTAGTTTTGACCTAGAGCGAAATCCCCATTTAACTGGTTTAAGCAGAATTTTAGCCCTCAGTTATGATGACCTGCCCTACTATTTGAAATCATGTATCTTGTATTTTGGTATATATCCTGAGAACTACTCCATCAGGTGCATAAGATTGGTTAGGCAATGGATTGCTGAGGGGTTTGTTATGAATGAGGAGGAAAAAGCTTTTGAGGAAGTTGCAGAACAATACTTGACNGAGCTGATCCACAGAAGCTTGGTTCAAGTCTCCAAAGTTGACTATGATGGGAGAGCTTTAAGTTGCCGAGTCCATGACTTGCTACGTGAAATGATTGTAAGAAAAATGAAGGACTTAAGTTTTTGTCGTGTTATTCATGAAGATGATCAACCAACCCTGGATGTAACAACTCGACGCTTAGCCATAGCAACTAACTCTAGTGATGTGCTTAGAAGCATTGGGCAGTGCTCACACATCCAGTCCATGTACATGTTTGAAGCAAGCAAATTGCCAGATCACTATTTGAGTTGGTTCCTTACAAAATCTAAGCTTTTGAAAGTGTTGGATTTGGAAGGTGCATCATTGGATTATGTTCCTTATGATTTGGGGAATATTTTTCACTTGAGGTACTTGAGCTTGAGGAAAACAAATGTTAAGCACATTCCAAAATCTATCGGTAATCTGCAGAACCTTGAGACCTTGGATCTAAAAGAAACACTAGTGCATGACTTGCCGAGCGAGATAAACAAGCTTACCAAGTTGCGCTATCTTTTAGTTTACCACAGAGATCCGAGTTATAGTATTCGAGGTGAAACTGGGGTGCGGTTGAAGGAAGGTATTGGAAACTTGACATTTCTACAAAAGCTTTATCATGTAGAGGCAGACCATGATAGACTAAACCTTATAGTAGAGCTAAGAAAGTTAAGGCAATTAAGGAAGTTGGGATTGAAGAATGTAAGGAGAGAATTTGGTAACACACTATGTGACTCAATAAAAGAGATGACCTGCCTTGATTCTCTTTCTATTACTGCGATGACTGAAGATGAAATCATAGATTTGCAATTTATTTCATCTCTCCCTCAACTTCGGAAACTTCACTTGTTCGGTCGCTTAGAAAAGCTNCCAAATTGGGTTCCAAGACTTGAGTATCTTATTGAGTTGTCAATCCGTTTTTCCAAGTTGAGGGATGATCAACTGAAGTCACTTAAAAACCTGCCAAATTTGCTGCGTCTCTCAATTTCAGGCGAAGCATATGCTGGTGAAACGTTGCATTTCGAAGCGGGGTTTCAGAGACTGAAGAGACTATACCTTGTAGACTTGAATGAAGTGAATTCCATTGTTATAGATGATGGATCTTTACCTTCTCTTGAACGAATCAAAATGATACGGTTGCCCCAACTAAAGGAGATTCCCTCTGGCTTCCACTTGCTAAAAAACCTTGAGTCTTTGTTTTTGACTGATATGCCACATGAACTCAACCAAGGCATTGATCCTAATAGTGGACCCAAGTACTGGGTCATCAAACATGTGCAAATGATATCAATTATAGAGAAGGCTGGTCCAAATTCTTTTGACTACAACAATCGCACTATTCGTCATCCAAGGGATATATGAATCAAGAATACCAAGGCTTCTCAATGTGGATGGAACTTGGAAGTTTGGGATTCTCAATATGTTGCCGTTCACAACATGGGCATTTATTGTTTTTCCATTATTTGGTGCTTTTCAATCTCCAAATAAAGTAAACTCTTGGGGCTATGCTGCTGCAATGCATATGAACCTCCTCGTGAATTTCTTTGATATTTGTTGTGTGTTCTAGGGGATTTTCTCTTCTTGAATTGTCTATGCATCTTTTATATTTTTGAGGTAAAGTGAAAACGTAAATGCAATTTCCTTTTCTCAATGGTGTTTAGCTTGGTGCCTGATCTTCGTAGTATATATTGACTGTCTCTTTTTCTGTGTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01960	33804	38028	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K14521	NAT10, KRE33	EC:2.3.1.-	Ribosome biogenesis in eukaryotes	map03008

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001960s00034843.1	PF05127.9	Helicase_RecD	7	46	2.10E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.379
SRR1783600	control	5.456
SRR1783602	moderate drought stress	3.663
SRR1811619	moderate drought stress	3.673

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.263
DRR006520	Root Summer glycyrrhizin high producing strain	7.160
DRR006521	Root Winter glycyrrhizin high producing strain	6.295
DRR006522	Root Winter glycyrrhizin high producing strain	6.172
DRR006523	Root Summer glycyrrhizin low producing strain	2.012
DRR006524	Root Summer glycyrrhizin low producing strain	1.976
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.769
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.771

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	10.688
SRR2868004	Drought Stress (root)	15.314
SRR2967015	Control (root)	13.963

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.299
SRR9715740	Leaf	4.378
SRR9715741	Leaf	5.338
SRR9715739	Root	1.084
SRR9715742	Root	5.713
SRR9715743	Root	4.644

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.202
SRR8749028	MeJA induced 9h	12.038
SRR8749029	MeJA induced 9h	6.423
SRR8749030	Uninduced	10.140
SRR8749031	Uninduced	13.578
SRR8749032	Uninduced	9.958

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	10.286
SRR8400027	Control - Root	9.208