Gene detail

Gene detail information of Glyur001960s00034840

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G24090.1	1.00E-09	RNase H family protein
NR	XP_006605069.1	5.25E-28	PREDICTED: putative ribonuclease H protein At1g65750-like [Glycine max]
COG	YP_003807369.1	2.00E-08	ribonuclease H [Desulfarculus baarsii DSM 2075]
Swissprot	tr\|P0C2F6\|RNHX1_ARATH	7.00E-24	Putative ribonuclease H protein At1g65750
trEMBL	tr\|I3SY99\|I3SY99_LOTJA	2.00E-25	Uncharacterized protein {ECO:0000313\|EMBL:AFK45241.1}

Sequence

Transcript Sequence

>Glyur001960s00034840.1
ATGATATCTTATTTGAGGCAAGCATCAAAGAAGCAACCAAGAAATACGCTGCAATTTGGGGCTCTGCTTAGGGTTGGAGGCCGAATGCTCATCTTAGGTAGGACGAGCGCCGCCCTTGTTAGGAGTGGCCGCCGCCTCCTTCCTCAGCTTGGAGGCGCTCTCTGTGTGTTTGGTGGGGAGCTGATTTGGGCGTTTGTTTTGTTGGCCCGTTGTCTGTTGTTTGTTGGTCTTCTTGTTGTTGATCTGTTTGTGGTTTTTCTCGTTTCTCTGTTTTTTTCTCTGTTTCATGTTTTGCGTTTGGCTTTCTGGATCATAGCTGCAATGAAGTGCCCATCTCCTCCGTTGTGGATCCTGGCTTGGAGTTGTGGTGTCTGTCATGGCTCCTCAGGTGTTTTTTGCCTTCCTTTTGCTGCGTGTTCTTGGGATGGGCTTGGGGCCCCAAATGGGTCAAAACCAACCCACTCAGAGAATTTTTTGGACATGTCGGAGGACGAACAAACAAGCATGAGATTACATAGAACAATCCAGATCGGATCACAATTGTGGAGAAATTCCCACCGGCGACATGAAATCGTCAGACCCAAATGCGAAAGTCCAGAGAAGAAACCAGAGCAGTCCACAGCTGTGAAAAATGTGACACTCCAGCTTGAAAGCGTCAGACCCAAATGCGACACTGCAGACAAGAATCCAGAGATGTCCACAGCTGTGAAAAATGTAATTCCCCCGGTCTATGCAGAGGCTGCTGCTTGTGGTGGAGTTATTAGGGATCACAATGGAGCTTTTTTGTGTCGCTATGCTGTTAAGCTGGGAGTTTGCACTGTCCCTCAAGCTGAGTTATGGGCGATTATCCATGGGCTTAGACTGACAAAGGAAAGAGGTTTCTCTAATGTCCAAGTGAAGTCAGATTCTCTCACAGCTATTAATTTCATTAAGGGTGGTTGCTTGGCCTCCCACCATTGTAGGCCCCTTGTGAATAAGATAAACAAGCTGCTGCCTGAAGCGGATGCAACTCGTGTCACTCATGTTTTCCGGGAAGCCAATCAAGTGGCGGACCATCTTGCTAATTATGGGCTTAGTCTAGAGATAGATTGTAGAGTTTTTGATGTTATCCCTGATTTTCTGTTGCACTCCCTTTTGGGAGATGTGTGTAATACTTTGTCCCCTTGCGGGTTTTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01960	16594	20560	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003676 nucleic acid binding

GO:0004523 RNA-DNA hybrid ribonuclease activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001960s00034840.1	PF13456.1	RVT_3	276	359	5.10E-22

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.160
SRR1783600	control	0.232
SRR1783602	moderate drought stress	0.807
SRR1811619	moderate drought stress	0.941

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.744
DRR006520	Root Summer glycyrrhizin high producing strain	0.325
DRR006521	Root Winter glycyrrhizin high producing strain	1.100
DRR006522	Root Winter glycyrrhizin high producing strain	1.078
DRR006523	Root Summer glycyrrhizin low producing strain	0.750
DRR006524	Root Summer glycyrrhizin low producing strain	1.034
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.219
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.140

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.207
SRR2868004	Drought Stress (root)	4.819
SRR2967015	Control (root)	6.073

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.447
SRR9715740	Leaf	1.026
SRR9715741	Leaf	0.057
SRR9715739	Root	0.512
SRR9715742	Root	0.061
SRR9715743	Root	0.178

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.893
SRR8749028	MeJA induced 9h	0.642
SRR8749029	MeJA induced 9h	0.827
SRR8749030	Uninduced	1.222
SRR8749031	Uninduced	0.785
SRR8749032	Uninduced	1.591

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.093
SRR8400027	Control - Root	1.253