Gene detail information of Glyur001958s00032473 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G21695.1 | 8.00E-06 | hydroxyproline-rich glycoprotein family protein |
| NR | XP_006581590.1 | 1.14E-58 | PREDICTED: uncharacterized protein LOC102670503 [Glycine max] |
| trEMBL | tr|I1KAD0|I1KAD0_SOYBN | 4.00E-59 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G12200.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01958 | 14324 | 15214 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 50.283 |
| SRR1783600 | control | 54.613 |
| SRR1783602 | moderate drought stress | 6.727 |
| SRR1811619 | moderate drought stress | 7.879 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.554 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.981 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.186 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.181 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.370 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.370 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.468 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.149 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 8.728 |
| SRR2868004 | Drought Stress (root) | 4.909 |
| SRR2967015 | Control (root) | 4.727 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.906 |
| SRR9715740 | Leaf | 1.016 |
| SRR9715741 | Leaf | 2.407 |
| SRR9715739 | Root | 13.149 |
| SRR9715742 | Root | 3.455 |
| SRR9715743 | Root | 5.984 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.176 |
| SRR8749028 | MeJA induced 9h | 1.172 |
| SRR8749029 | MeJA induced 9h | 0.665 |
| SRR8749030 | Uninduced | 1.867 |
| SRR8749031 | Uninduced | 0.389 |
| SRR8749032 | Uninduced | 1.971 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 167.822 |
| SRR8400027 | Control - Root | 85.920 |